UHGV-0290960

Genome information

Genome length 37,834 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0290960
vOTU ID	vOTU-011885
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1305900_119_155037_round347~4709794
BioSample	SAMEA3888925
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.18
Jumbo phage	No

Genome content
Genome length	37,834 bps
GC content	28.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	87.95%
Average CDS length	446.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0290960_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0290960_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0290960_1	UniRef90	UniRef90_R7GH38	Recombinase	NA
UHGV-0290960_1	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0290960_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0290960_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0290960_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0290960_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0290960_4	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0290960_5	Pfam	PF04277	Oxaloacetate decarboxylase, gamma chain	OAD_gamma
UHGV-0290960_8	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0290960_8	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0290960_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0290960_9	PHROG	phrog_35436	amidase	lysis
UHGV-0290960_9	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0290960_9	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0290960_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0290960_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0290960_9	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0290960_9	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0290960_10	PHROG	phrog_199	holin	lysis
UHGV-0290960_10	UniRef90	UniRef90_UPI00085C2E64	phage holin family protein	NA
UHGV-0290960_10	eggNOG-mapper	411902.CLOBOL_03863	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0290960_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0290960_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0290960_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0290960_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0290960_13	PHROG	phrog_13879	NA	unknown function
UHGV-0290960_13	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0290960_14	PHROG	phrog_1194	NA	unknown function
UHGV-0290960_14	eggNOG-mapper	1229517.AMFD01000023_gene1305	NA	NA
UHGV-0290960_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0290960_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0290960_15	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0290960_15	COG	COG1511	NA	NA
UHGV-0290960_16	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0290960_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0290960_16	UniRef90	UniRef90_R6H5W8	Phage-related protein-like protein	NA
UHGV-0290960_16	eggNOG-mapper	691966.D4P728_9CAUD	peptidoglycan catabolic process	NA
UHGV-0290960_17	PHROG	phrog_10292	NA	unknown function
UHGV-0290960_17	UniRef90	UniRef90_A0A6N9PTJ0	TM2 domain-containing protein	NA
UHGV-0290960_17	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0290960_17	Pfam	PF05154	TM2 domain	TM2
UHGV-0290960_17	COG	COG2314	NA	NA
UHGV-0290960_17	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0290960_18	PHROG	phrog_806	NA	unknown function
UHGV-0290960_18	UniRef90	UniRef90_A0A1L8ZRA7	NA	NA
UHGV-0290960_18	eggNOG-mapper	1510440.A0A068ETV6_9CAUD	NA	NA
UHGV-0290960_18	Pfam	PF11611	NA	DUF4352
UHGV-0290960_18	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0290960_20	Structural annotation	PF12363	NA	NA
UHGV-0290960_21	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0290960_22	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0290960_22	Structural annotation	PF05657	NA	NA
UHGV-0290960_23	Structural annotation	TIGR01725	NA	NA
UHGV-0290960_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0290960_25	eggNOG-mapper	445972.ANACOL_01847	NA	NA
UHGV-0290960_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0290960_26	UniRef90	UniRef90_R6HF87	HeH domain-containing protein	NA
UHGV-0290960_26	eggNOG-mapper	1217703.F904_00188	NA	NA
UHGV-0290960_26	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-0290960_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0290960_27	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0290960_27	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0290960_28	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0290960_28	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-0290960_28	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0290960_28	Pfam	PF14265	NA	DUF4355
UHGV-0290960_28	Structural annotation	PF14265	NA	NA
UHGV-0290960_31	UniRef90	UniRef90_A0A6M0SIM4	Phage_Mu_F domain-containing protein	NA
UHGV-0290960_31	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0290960_31	COG	COG2369	NA	NA
UHGV-0290960_32	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0290960_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0290960_33	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0290960_33	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0290960_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0290960_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0290960_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0290960_34	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0290960_34	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0290960_34	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0290960_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0290960_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0290960_34	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0290960_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0290960_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0290960_35	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0290960_35	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0290960_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0290960_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0290960_35	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0290960_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0290960_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0290960_36	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0290960_36	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0290960_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0290960_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0290960_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0290960_38	PHROG	phrog_1233	NA	unknown function
UHGV-0290960_38	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0290960_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0290960_38	Structural annotation	PF13058	NA	NA
UHGV-0290960_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0290960_41	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0290960_43	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0290960_43	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0290960_43	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0290960_54	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0290960_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0290960_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0290960_56	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0290960_56	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0290960_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0290960_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0290960_58	PHROG	phrog_4973	NA	unknown function
UHGV-0290960_58	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0290960_58	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0290960_58	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-0290960_59	PHROG	phrog_9804	NA	unknown function
UHGV-0290960_59	UniRef90	UniRef90_UPI00058D49CF	replicative helicase loader/inhibitor	NA
UHGV-0290960_59	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0290960_59	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0290960_59	Structural annotation	PF11417	NA	NA
UHGV-0290960_60	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0290960_60	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0290960_60	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0290960_60	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0290960_61	PHROG	phrog_7566	NA	unknown function
UHGV-0290960_61	eggNOG-mapper	1235792.C808_03078	NA	NA
UHGV-0290960_62	PHROG	phrog_1389	NA	unknown function
UHGV-0290960_62	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0290960_62	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0290960_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0290960_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0290960_63	UniRef90	UniRef90_R5Z2P9	Single-stranded DNA-binding protein	NA
UHGV-0290960_63	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0290960_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0290960_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0290960_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0290960_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0290960_63	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0290960_64	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0290960_64	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-0290960_64	eggNOG-mapper	1329516.JPST01000033_gene2854	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0290960_64	Pfam	PF13479	AAA domain	AAA_24
UHGV-0290960_64	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0290960_64	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0290960_69	PHROG	phrog_2211	NA	unknown function
UHGV-0290960_69	eggNOG-mapper	935948.KE386495_gene1208	NA	NA
UHGV-0290960_72	UniRef90	UniRef90_R5YJV7	Cro-like repressor	NA
UHGV-0290960_72	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0290960_73	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0290960_73	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0290960_73	UniRef90	UniRef90_R7F6V6	LexA repressor	NA
UHGV-0290960_73	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0290960_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0290960_73	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0290960_73	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0290960_73	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA