UHGV-0291239

Genome information

vOTU vOTU-002051

Genome length 34,467 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0291239
vOTU ID	vOTU-002051
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5091478_141_97455_round347~3817359
BioSample	SAMN10342714
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.89
Jumbo phage	No

Genome content
Genome length	34,467 bps
GC content	46.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.14%
Average CDS length	555.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0291239_1	PHROG	phrog_1281	NA	unknown function
UHGV-0291239_1	UniRef90	UniRef90_UPI001B8DA4C4	NA	NA
UHGV-0291239_1	eggNOG-mapper	1437603.BMON_0174	NA	NA
UHGV-0291239_1	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0291239_1	COG	COG3600	NA	NA
UHGV-0291239_1	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0291239_2	UniRef90	UniRef90_A0A1Y4EZD8	Antitoxin	NA
UHGV-0291239_2	eggNOG-mapper	1235802.C823_00070	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0291239_2	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0291239_2	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0291239_2	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0291239_2	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0291239_3	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0291239_3	PHROG	phrog_2455	NA	unknown function
UHGV-0291239_3	UniRef90	UniRef90_A0A1I0GIT7	Plasmid stabilization system protein ParE	NA
UHGV-0291239_3	eggNOG-mapper	1235790.C805_03645	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0291239_3	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0291239_3	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0291239_3	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0291239_4	KOfam	K14059	int; integrase	NA
UHGV-0291239_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0291239_4	UniRef90	UniRef90_UPI000EFD71F4	tyrosine-type recombinase/integrase	NA
UHGV-0291239_4	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0291239_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0291239_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0291239_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0291239_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0291239_7	UniRef90	UniRef90_UPI0006B654A6	helix-turn-helix transcriptional regulator	NA
UHGV-0291239_7	eggNOG-mapper	1296662.S5MCH5_9CAUD	sequence-specific DNA binding	NA
UHGV-0291239_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0291239_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0291239_7	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0291239_8	UniRef90	UniRef90_A0A7X0MWK7	Excisionase family DNA binding protein	NA
UHGV-0291239_8	eggNOG-mapper	1122947.FR7_1995	domain protein	NA
UHGV-0291239_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0291239_8	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0291239_8	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0291239_10	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0291239_10	eggNOG-mapper	290402.Cbei_0888	Helix-turn-helix XRE-family like proteins	NA
UHGV-0291239_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0291239_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0291239_10	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0291239_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0291239_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0291239_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0291239_17	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0291239_17	UniRef90	UniRef90_A0A843J181	Host-nuclease inhibitor Gam family protein	NA
UHGV-0291239_17	eggNOG-mapper	1519439.JPJG01000051_gene723	Bacteriophage Mu Gam like protein	NA
UHGV-0291239_17	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0291239_17	Structural annotation	PF07352	NA	NA
UHGV-0291239_18	PHROG	phrog_27776	NA	unknown function
UHGV-0291239_18	eggNOG-mapper	479434.Sthe_1313	NA	NA
UHGV-0291239_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0291239_19	PHROG	phrog_1389	NA	unknown function
UHGV-0291239_19	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0291239_19	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0291239_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0291239_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0291239_20	UniRef90	UniRef90_A0A8F2JB44	Single-stranded DNA-binding protein	NA
UHGV-0291239_20	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0291239_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0291239_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0291239_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0291239_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0291239_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0291239_21	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0291239_21	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0291239_21	eggNOG-mapper	1120998.AUFC01000030_gene2219	NA	NA
UHGV-0291239_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0291239_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0291239_21	Structural annotation	PF14297	NA	NA
UHGV-0291239_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0291239_24	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0291239_24	UniRef90	UniRef90_A7VTC7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0291239_24	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0291239_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0291239_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0291239_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0291239_25	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0291239_25	PHROG	phrog_9562	NA	unknown function
UHGV-0291239_25	eggNOG-mapper	1151292.QEW_3618	Pentapeptide repeat protein	NA
UHGV-0291239_25	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0291239_25	Pfam	PF19062	NA	DUF5758
UHGV-0291239_25	NCBIFam	NF038108.1	Cys-every-fifth RiPP peptide CefA	NA
UHGV-0291239_25	COG	COG1357	NA	NA
UHGV-0291239_25	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0291239_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0291239_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0291239_26	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0291239_26	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0291239_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0291239_26	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0291239_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0291239_26	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0291239_27	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0291239_27	UniRef90	UniRef90_A0A6I5ZQ17	DNA N-6-adenine-methyltransferase	NA
UHGV-0291239_27	eggNOG-mapper	1121468.AUBR01000007_gene286	DNA N-6-adenine-methyltransferase	NA
UHGV-0291239_27	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0291239_27	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0291239_27	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0291239_28	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-0291239_28	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0291239_28	Structural annotation	PF18909	NA	NA
UHGV-0291239_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0291239_32	Pfam	PF15175	Spermatogenesis-associated protein 24	SPATA24
UHGV-0291239_32	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0291239_33	UniRef90	UniRef90_A7VTB3	Helix-turn-helix domain-containing protein	NA
UHGV-0291239_33	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0291239_33	Structural annotation	PF13542	NA	NA
UHGV-0291239_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0291239_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0291239_34	UniRef90	UniRef90_A0A847YTD2	PBSX family phage terminase large subunit	NA
UHGV-0291239_34	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0291239_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0291239_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0291239_34	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0291239_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0291239_35	UniRef90	UniRef90_A0A4P8I9P9	Phage minor capsid protein	NA
UHGV-0291239_35	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0291239_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0291239_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0291239_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0291239_36	UniRef90	UniRef90_UPI0004B3060C	phage minor capsid protein	NA
UHGV-0291239_36	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0291239_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0291239_36	COG	COG2369	NA	NA
UHGV-0291239_36	Structural annotation	PF06152, PF15542	NA	NA
UHGV-0291239_37	Structural annotation	PF10827	NA	NA
UHGV-0291239_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0291239_38	UniRef90	UniRef90_A0A0R1HZY8	Scaffolding protein SbcC-like protein	NA
UHGV-0291239_38	eggNOG-mapper	97137.C821_00687	Phage minor structural protein GP20	NA
UHGV-0291239_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0291239_38	Structural annotation	PF06810	NA	NA
UHGV-0291239_39	PHROG	phrog_267	major head protein	head and packaging
UHGV-0291239_39	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0291239_39	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0291239_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0291239_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0291239_40	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0291239_41	PHROG	phrog_3366	NA	unknown function
UHGV-0291239_41	Structural annotation	PF20536	NA	NA
UHGV-0291239_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0291239_42	UniRef90	UniRef90_UPI000C08BB0A	minor capsid protein	NA
UHGV-0291239_42	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0291239_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0291239_42	Structural annotation	PF11114	NA	NA
UHGV-0291239_43	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0291239_43	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-0291239_43	Structural annotation	PF12691	NA	NA
UHGV-0291239_44	PHROG	phrog_3099	NA	unknown function
UHGV-0291239_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0291239_45	eggNOG-mapper	536233.CLO_0892	NA	NA
UHGV-0291239_45	Structural annotation	PF10666	NA	NA
UHGV-0291239_46	PHROG	phrog_706	NA	unknown function
UHGV-0291239_46	UniRef90	UniRef90_UPI001896FAF1	bacteriophage Gp15 family protein	NA
UHGV-0291239_46	eggNOG-mapper	573061.Clocel_0219	Bacteriophage Gp15 protein	NA
UHGV-0291239_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0291239_46	Structural annotation	PF06854	NA	NA
UHGV-0291239_47	PHROG	phrog_19074	NA	unknown function
UHGV-0291239_47	UniRef90	UniRef90_UPI00067EBDC6	phage tail tape measure protein	NA
UHGV-0291239_47	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-0291239_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0291239_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0291239_47	COG	COG3883	NA	NA
UHGV-0291239_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0291239_48	PHROG	phrog_36410	NA	unknown function
UHGV-0291239_48	UniRef90	UniRef90_A0A146LW88	Phage tail protein	NA
UHGV-0291239_48	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0291239_48	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0291239_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0291239_48	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0291239_49	PHROG	phrog_538	minor tail protein	tail
UHGV-0291239_49	UniRef90	UniRef90_UPI00188AE414	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0291239_49	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0291239_49	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0291239_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0291239_50	PHROG	phrog_1220	head protein	head and packaging
UHGV-0291239_50	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0291239_50	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0291239_50	Structural annotation	PF20747	NA	NA
UHGV-0291239_53	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0291239_53	PHROG	phrog_894	endolysin	lysis
UHGV-0291239_53	UniRef90	UniRef90_A0A1C6AVQ8	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0291239_53	eggNOG-mapper	573061.Clocel_3512	Peptidase M15	NA
UHGV-0291239_53	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0291239_53	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0291239_53	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0291239_53	COG	COG3108	NA	NA
UHGV-0291239_53	Structural annotation	PF05951, PF01471, TIGR02869, COG3108, COG3409	NA	NA
UHGV-0291239_54	PHROG	phrog_937	hemolysin	other
UHGV-0291239_55	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0291239_55	UniRef90	UniRef90_UPI00189EB32E	Rha family transcriptional regulator	NA
UHGV-0291239_55	eggNOG-mapper	428125.CLOLEP_01779	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0291239_55	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0291239_55	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0291239_55	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0291239_55	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0291239_56	PHROG	phrog_443	holin	lysis
UHGV-0291239_56	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0291239_56	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0291239_56	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0291239_56	Structural annotation	PF16945	NA	NA
UHGV-0291239_57	PHROG	phrog_1281	NA	unknown function
UHGV-0291239_57	UniRef90	UniRef90_K2DKH4	Phage-associated protein	NA
UHGV-0291239_57	eggNOG-mapper	1235798.C817_03619	NA	NA
UHGV-0291239_57	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0291239_57	COG	COG3600	NA	NA
UHGV-0291239_57	Structural annotation	PF13274, COG3600	NA	NA