UHGV-0292876

Genome information

Genome length 26,899 bps

CDS count 45

Completeness 61.43% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0292876
vOTU ID	vOTU-030751
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8490392_141_7996_round8-12~727068
BioSample	SAMN10781792
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.6
Jumbo phage	No

Genome content
Genome length	26,899 bps
GC content	51.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.56%
Average CDS length	550.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0292876_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0292876_2	Structural annotation	PF12510	NA	NA
UHGV-0292876_3	PHROG	phrog_20016	NA	unknown function
UHGV-0292876_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0292876_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0292876_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0292876_4	PHROG	phrog_16490	NA	unknown function
UHGV-0292876_4	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0292876_5	PHROG	phrog_22984	NA	unknown function
UHGV-0292876_6	PHROG	phrog_21718	NA	unknown function
UHGV-0292876_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0292876_7	PHROG	phrog_3754	NA	unknown function
UHGV-0292876_7	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0292876_8	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0292876_8	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0292876_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0292876_9	PHROG	phrog_670	endolysin	lysis
UHGV-0292876_9	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0292876_9	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0292876_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0292876_9	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0292876_9	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0292876_10	PHROG	phrog_1129	holin	lysis
UHGV-0292876_10	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0292876_10	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0292876_10	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0292876_10	Structural annotation	PF06946	NA	NA
UHGV-0292876_12	PHROG	phrog_937	hemolysin	other
UHGV-0292876_12	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0292876_13	PHROG	phrog_2310	NA	unknown function
UHGV-0292876_14	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0292876_15	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-0292876_15	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0292876_15	Structural annotation	PF18459	NA	NA
UHGV-0292876_16	PHROG	phrog_32744	NA	unknown function
UHGV-0292876_16	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0292876_16	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0292876_17	PHROG	phrog_1194	NA	unknown function
UHGV-0292876_17	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0292876_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0292876_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0292876_18	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0292876_18	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0292876_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0292876_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0292876_19	PHROG	phrog_706	NA	unknown function
UHGV-0292876_19	UniRef90	UniRef90_UPI0018A0FACA	Gp15 family bacteriophage protein	NA
UHGV-0292876_19	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0292876_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0292876_19	Structural annotation	PF06854	NA	NA
UHGV-0292876_20	PHROG	phrog_11299	NA	unknown function
UHGV-0292876_20	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-0292876_20	Structural annotation	PF10666	NA	NA
UHGV-0292876_21	PHROG	phrog_3099	NA	unknown function
UHGV-0292876_21	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0292876_21	Structural annotation	TIGR02126	NA	NA
UHGV-0292876_22	PHROG	phrog_3266	tail completion	connector
UHGV-0292876_22	eggNOG-mapper	1226322.HMPREF1545_00055	NA	NA
UHGV-0292876_22	Structural annotation	PF12691	NA	NA
UHGV-0292876_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0292876_23	UniRef90	UniRef90_UPI00189F11C5	minor capsid protein	NA
UHGV-0292876_23	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0292876_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0292876_23	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0292876_24	PHROG	phrog_3366	NA	unknown function
UHGV-0292876_24	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0292876_24	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0292876_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0292876_25	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0292876_26	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0292876_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0292876_27	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0292876_27	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0292876_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0292876_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0292876_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0292876_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0292876_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0292876_28	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0292876_28	AcrCatalog	cluster_74817	NA	NA
UHGV-0292876_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0292876_29	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-0292876_29	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0292876_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0292876_29	COG	COG2369	NA	NA
UHGV-0292876_29	Structural annotation	PF06152	NA	NA
UHGV-0292876_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0292876_30	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0292876_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0292876_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0292876_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0292876_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0292876_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0292876_31	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0292876_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0292876_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0292876_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0292876_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0292876_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0292876_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0292876_32	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0292876_32	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0292876_32	Structural annotation	PF13542	NA	NA
UHGV-0292876_34	PHROG	phrog_8684	NA	unknown function
UHGV-0292876_34	UniRef90	UniRef90_UPI00164C829D	YopX family protein	NA
UHGV-0292876_34	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0292876_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0292876_36	PHROG	phrog_22543	NA	unknown function
UHGV-0292876_38	PHROG	phrog_38832	NA	unknown function
UHGV-0292876_38	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0292876_40	PHROG	phrog_37865	NA	unknown function
UHGV-0292876_42	PHROG	phrog_25732	NA	unknown function
UHGV-0292876_42	Structural annotation	NF041588	NA	NA
UHGV-0292876_45	PHROG	phrog_10714	NA	unknown function
UHGV-0292876_45	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0292876_45	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA