UHGV-0293028

Genome information

Genome length 22,823 bps

CDS count 27

Completeness 56.60% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0293028
vOTU ID	vOTU-031829
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5818482_141_84217_round347~4220738
BioSample	SAMN07285664
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.63
Jumbo phage	No

Genome content
Genome length	22,823 bps
GC content	40.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	95.91%
Average CDS length	818.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0293028_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0293028_1	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-0293028_1	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-0293028_1	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0293028_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0293028_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0293028_1	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0293028_1	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0293028_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0293028_2	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-0293028_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0293028_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0293028_2	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0293028_3	KOfam	K19326	SYNE1; nesprin-1	NA
UHGV-0293028_3	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0293028_3	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-0293028_3	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0293028_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0293028_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0293028_3	COG	COG1340	NA	NA
UHGV-0293028_3	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0293028_5	PHROG	phrog_88	major tail protein	tail
UHGV-0293028_5	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0293028_5	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0293028_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0293028_5	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0293028_6	PHROG	phrog_78	tail terminator	connector
UHGV-0293028_6	Structural annotation	PF05657	NA	NA
UHGV-0293028_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0293028_7	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0293028_7	eggNOG-mapper	1118063.I7ILS4_9CAUD	exonuclease activity	NA
UHGV-0293028_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0293028_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0293028_7	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0293028_8	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0293028_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0293028_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0293028_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0293028_9	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0293028_9	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0293028_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0293028_9	Structural annotation	PF05135	NA	NA
UHGV-0293028_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0293028_10	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0293028_10	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0293028_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0293028_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0293028_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0293028_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0293028_10	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0293028_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0293028_11	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0293028_11	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-0293028_11	Pfam	PF14265	NA	DUF4355
UHGV-0293028_11	Structural annotation	PF14265	NA	NA
UHGV-0293028_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0293028_13	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0293028_13	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0293028_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0293028_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0293028_13	COG	COG2369	NA	NA
UHGV-0293028_13	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0293028_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0293028_14	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0293028_14	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0293028_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0293028_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0293028_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0293028_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0293028_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0293028_15	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0293028_15	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0293028_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0293028_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0293028_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0293028_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0293028_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0293028_16	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0293028_16	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0293028_16	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0293028_16	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0293028_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0293028_16	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0293028_16	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0293028_17	PHROG	phrog_21498	NA	unknown function
UHGV-0293028_17	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-0293028_17	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0293028_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0293028_18	PHROG	phrog_21498	NA	unknown function
UHGV-0293028_18	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0293028_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0293028_19	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0293028_19	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0293028_19	UniRef90	UniRef90_A0A1C6E4Y4	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	NA
UHGV-0293028_19	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0293028_19	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0293028_19	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0293028_19	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0293028_19	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0293028_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0293028_20	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0293028_20	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0293028_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0293028_20	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0293028_23	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0293028_23	UniRef90	UniRef90_A0A416CVN3	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0293028_23	eggNOG-mapper	1321774.HMPREF9108_00245	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0293028_23	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0293028_23	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0293028_24	PHROG	phrog_6802	NA	unknown function
UHGV-0293028_24	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0293028_25	PHROG	phrog_419	NA	unknown function
UHGV-0293028_25	UniRef90	UniRef90_UPI001CC11C4F	PGDYG domain-containing protein	NA
UHGV-0293028_25	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0293028_25	Structural annotation	PF14083	NA	NA