UHGV-0296288

Genome information

vOTU vOTU-011901

Genome length 42,725 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9612

Prediction confidence Confident

Genome information
Genome ID	UHGV-0296288
vOTU ID	vOTU-011901
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k99_70854_round8-12~544497
BioSample	SAMEA2466916
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9612
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.35
Jumbo phage	No

Genome content
Genome length	42,725 bps
GC content	38.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.66%
Average CDS length	567.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0296288_1	UniRef90	UniRef90_A0A2S5D7S3	Type III restriction system endonuclease, putative	NA
UHGV-0296288_1	eggNOG-mapper	1408437.JNJN01000062_gene399	T5orf172	NA
UHGV-0296288_1	COG	COG4096	Type I site-specific restriction endonuclease, part of a restriction-modification system	NA
UHGV-0296288_2	PHROG	phrog_26280	NA	unknown function
UHGV-0296288_2	UniRef90	UniRef90_UPI000360611B	NA	NA
UHGV-0296288_2	Pfam	PF19448	NA	DUF5986
UHGV-0296288_3	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0296288_3	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0296288_3	UniRef90	UniRef90_A0A1Y4NH71	Transcriptional regulator	NA
UHGV-0296288_3	eggNOG-mapper	158190.SpiGrapes_0576	NA	NA
UHGV-0296288_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0296288_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0296288_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0296288_3	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0296288_4	eggNOG-mapper	1160721.RBI_II00412	NA	NA
UHGV-0296288_4	PADLOC	shah_acc_0159	methyl transferase	CRISPR-CAS
UHGV-0296288_5	UniRef90	UniRef90_A0A373GNZ4	NA	NA
UHGV-0296288_5	eggNOG-mapper	1123511.KB905842_gene1571	NA	NA
UHGV-0296288_5	PADLOC	drt-cluster579	DRT	DRT
UHGV-0296288_5	Pfam	PF08902	NA	DUF1848
UHGV-0296288_5	COG	COG1533	DNA repair photolyase	NA
UHGV-0296288_5	Structural annotation	PF08902, MF_01873, NF033719, COG0820	NA	NA
UHGV-0296288_6	PHROG	phrog_24764	NA	unknown function
UHGV-0296288_6	UniRef90	UniRef90_A0A316LEC0	TnpV protein	NA
UHGV-0296288_6	eggNOG-mapper	428125.CLOLEP_03218	NA	NA
UHGV-0296288_6	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-0296288_6	Structural annotation	PF14198	NA	NA
UHGV-0296288_7	UniRef90	UniRef90_A0A358WCE9	Mor domain-containing protein	NA
UHGV-0296288_7	eggNOG-mapper	1499684.CCNP01000010_gene60	Mor transcription activator family	NA
UHGV-0296288_7	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0296288_9	UniRef90	UniRef90_A0A7U9RGQ5	DZANK-type domain-containing protein	NA
UHGV-0296288_9	eggNOG-mapper	1235790.C805_02279	NA	NA
UHGV-0296288_12	PHROG	phrog_3230	NA	unknown function
UHGV-0296288_12	UniRef90	UniRef90_A0A374UPQ1	NA	NA
UHGV-0296288_12	eggNOG-mapper	1122947.FR7_2704	NA	NA
UHGV-0296288_12	Pfam	PF07799	NA	DUF1643
UHGV-0296288_12	COG	COG4333	NA	NA
UHGV-0296288_13	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0296288_13	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0296288_13	UniRef90	UniRef90_A0A2N0UKB1	ADP-ribosyl-[dinitrogen reductase] hydrolase	NA
UHGV-0296288_13	eggNOG-mapper	411477.PARMER_00972	ADP-ribosylglycohydrolase	NA
UHGV-0296288_13	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0296288_13	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0296288_13	Structural annotation	PF03747, TIGR02662, COG1397	NA	NA
UHGV-0296288_14	eggNOG-mapper	1408287.AXUR01000081_gene2183	NA	NA
UHGV-0296288_15	PHROG	phrog_35892	NA	unknown function
UHGV-0296288_15	UniRef90	UniRef90_A0A1Q6RZI6	WYL domain-containing protein	NA
UHGV-0296288_15	eggNOG-mapper	1410626.JHXB01000001_gene2199	Leucine rich repeats (6 copies)	NA
UHGV-0296288_15	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0296288_15	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0296288_15	COG	COG5492	NA	NA
UHGV-0296288_16	KOfam	K14059	int; integrase	NA
UHGV-0296288_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0296288_16	UniRef90	UniRef90_UPI000E4C7350	site-specific integrase	NA
UHGV-0296288_16	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0296288_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0296288_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0296288_16	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0296288_17	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0296288_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0296288_19	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0296288_19	UniRef90	UniRef90_A0A373KVP1	XRE family transcriptional regulator	NA
UHGV-0296288_19	eggNOG-mapper	525254.HMPREF0072_0267	DNA-binding helix-turn-helix protein	NA
UHGV-0296288_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0296288_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0296288_19	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0296288_21	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0296288_22	Structural annotation	COG1862	NA	NA
UHGV-0296288_25	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0296288_25	PHROG	phrog_1499	NA	unknown function
UHGV-0296288_25	UniRef90	UniRef90_A0A374HKI1	AAA_23 domain-containing protein	NA
UHGV-0296288_25	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0296288_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-0296288_25	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0296288_25	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0296288_26	PHROG	phrog_21613	NA	unknown function
UHGV-0296288_26	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0296288_27	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0296288_27	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0296288_27	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0296288_27	Pfam	PF12684	NA	DUF3799
UHGV-0296288_27	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0296288_27	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0296288_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0296288_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0296288_28	UniRef90	UniRef90_A0A3D0X741	Single-stranded DNA-binding protein	NA
UHGV-0296288_28	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0296288_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0296288_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0296288_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0296288_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0296288_28	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0296288_29	PHROG	phrog_8600	NA	unknown function
UHGV-0296288_29	UniRef90	UniRef90_F9MTR3	YozE_SAM_like domain-containing protein	NA
UHGV-0296288_29	eggNOG-mapper	879308.HMPREF9130_0832	YozE SAM-like fold	NA
UHGV-0296288_29	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0296288_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0296288_30	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0296288_30	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0296288_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0296288_30	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0296288_32	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0296288_32	PHROG	phrog_11992	NA	unknown function
UHGV-0296288_32	UniRef90	UniRef90_A0A358PLG9	DNA primase	NA
UHGV-0296288_32	eggNOG-mapper	1105031.HMPREF1141_1761	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0296288_32	PADLOC	drt-cluster192	DRT	DRT
UHGV-0296288_32	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0296288_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0296288_32	Structural annotation	PF01807	NA	NA
UHGV-0296288_33	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0296288_33	UniRef90	UniRef90_UPI000C07D7A2	NA	NA
UHGV-0296288_33	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0296288_33	Pfam	PF06048	NA	DUF927
UHGV-0296288_33	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0296288_33	COG	COG5519	NA	NA
UHGV-0296288_33	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0296288_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0296288_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0296288_34	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0296288_34	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0296288_34	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0296288_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0296288_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0296288_34	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0296288_37	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0296288_37	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-0296288_37	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0296288_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0296288_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0296288_37	Structural annotation	PF13395, TIGR02646, COG1403	NA	NA
UHGV-0296288_38	Structural annotation	PF18337, MF_01194, NF000331, COG1862	NA	NA
UHGV-0296288_39	PHROG	phrog_25754	NA	unknown function
UHGV-0296288_39	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0296288_39	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-0296288_40	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0296288_40	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0296288_40	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0296288_43	KOfam	K07039	NA	NA
UHGV-0296288_43	eggNOG-mapper	105559.Nwat_1183	Belongs to the UPF0225 family	NA
UHGV-0296288_43	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-0296288_43	COG	COG3012	NA	NA
UHGV-0296288_46	eggNOG-mapper	1035196.HMPREF9998_01748	methyltransferase	NA
UHGV-0296288_46	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0296288_47	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0296288_47	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0296288_47	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-0296288_47	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0296288_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0296288_50	UniRef90	UniRef90_A0A412LC59	XRE family transcriptional regulator	NA
UHGV-0296288_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0296288_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0296288_50	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0296288_51	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0296288_51	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0296288_51	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0296288_51	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0296288_51	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0296288_52	PHROG	phrog_1066	NA	unknown function
UHGV-0296288_52	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0296288_52	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0296288_53	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0296288_53	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0296288_53	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0296288_53	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0296288_53	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0296288_53	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0296288_53	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0296288_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0296288_54	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0296288_54	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0296288_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0296288_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0296288_54	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0296288_55	PHROG	phrog_21498	NA	unknown function
UHGV-0296288_55	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0296288_55	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0296288_55	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0296288_55	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0296288_56	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0296288_56	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0296288_56	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0296288_56	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0296288_56	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0296288_56	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0296288_56	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0296288_57	PHROG	phrog_10	major head protein	head and packaging
UHGV-0296288_57	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0296288_57	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0296288_57	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0296288_57	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0296288_57	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0296288_57	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0296288_58	PHROG	phrog_5223	neck protein	connector
UHGV-0296288_58	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0296288_58	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0296288_58	Structural annotation	TIGR01560	NA	NA
UHGV-0296288_59	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0296288_59	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0296288_59	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0296288_59	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0296288_59	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0296288_60	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0296288_60	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0296288_60	Structural annotation	TIGR01725	NA	NA
UHGV-0296288_61	Structural annotation	PF12691	NA	NA
UHGV-0296288_62	PHROG	phrog_885	major tail protein	tail
UHGV-0296288_62	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0296288_62	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0296288_62	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0296288_63	eggNOG-mapper	272562.CA_C0058	NA	NA
UHGV-0296288_65	PHROG	phrog_23464	NA	unknown function
UHGV-0296288_65	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0296288_65	COG	COG5283	Phage-related tail protein	NA
UHGV-0296288_65	Structural annotation	COG3941	NA	NA
UHGV-0296288_66	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0296288_66	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0296288_66	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0296288_66	COG	COG4722	Phage-related protein YomH	NA
UHGV-0296288_66	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0296288_67	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0296288_67	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0296288_67	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0296288_67	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0296288_67	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0296288_67	COG	COG4926	Phage-related protein	NA
UHGV-0296288_67	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0296288_68	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0296288_68	Structural annotation	PF10651	NA	NA