UHGV-0296494

Genome information

Genome length 29,054 bps

CDS count 37

Completeness 50.98% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0296494
vOTU ID	vOTU-023952
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_273_round14~1924184
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	50.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	25
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.51
Jumbo phage	No

Genome content
Genome length	29,054 bps
GC content	53.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.31%
Average CDS length	736.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0296494_1	PHROG	phrog_2959	minor tail protein	tail
UHGV-0296494_1	UniRef90	UniRef90_UPI000FFC1A22	phage minor tail protein L	NA
UHGV-0296494_1	eggNOG-mapper	1440052.EAKF1_ch0450c	Phage minor tail protein L	NA
UHGV-0296494_1	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0296494_1	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0296494_1	COG	COG4672	Phage tail protein	NA
UHGV-0296494_1	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0296494_2	PHROG	phrog_14	minor tail protein	tail
UHGV-0296494_2	UniRef90	UniRef90_A0A066T2Q8	Phage tail protein	NA
UHGV-0296494_2	eggNOG-mapper	1440052.EAKF1_ch0451c	Phage minor tail protein	NA
UHGV-0296494_2	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0296494_2	COG	COG4718	Phage tail protein	NA
UHGV-0296494_2	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0296494_3	PHROG	phrog_19302	NA	unknown function
UHGV-0296494_3	UniRef90	UniRef90_A0A8A5HTV4	Phage tail tape measure protein	NA
UHGV-0296494_3	eggNOG-mapper	1440052.EAKF1_ch0452c	sister chromatid segregation	NA
UHGV-0296494_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0296494_3	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0296494_3	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0296494_3	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0296494_3	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0296494_3	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0296494_4	PHROG	phrog_14766	tail protein	tail
UHGV-0296494_4	UniRef90	UniRef90_A0A2Y0AVP5	NA	NA
UHGV-0296494_4	eggNOG-mapper	1440052.EAKF1_ch0454c	NA	NA
UHGV-0296494_4	Pfam	PF13227	NA	DUF4035
UHGV-0296494_4	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0296494_5	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-0296494_5	UniRef90	UniRef90_E1JDM6	Phage tail assembly chaperone	NA
UHGV-0296494_5	eggNOG-mapper	1440052.EAKF1_ch0455c	tail assembly chaperone	NA
UHGV-0296494_5	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0296494_5	Structural annotation	PF06222	NA	NA
UHGV-0296494_6	PHROG	phrog_158	major tail protein	tail
UHGV-0296494_6	UniRef90	UniRef90_E6BSD0	Ig-like domain-containing protein	NA
UHGV-0296494_6	eggNOG-mapper	1440052.EAKF1_ch0456c	Immunoglobulin	NA
UHGV-0296494_6	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0296494_6	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0296494_7	PHROG	phrog_347	tail terminator	connector
UHGV-0296494_7	UniRef90	UniRef90_D3GXN5	Putative prophage protein	NA
UHGV-0296494_7	eggNOG-mapper	1440052.EAKF1_ch0457c	NA	NA
UHGV-0296494_7	Pfam	PF11367	NA	DUF3168
UHGV-0296494_7	Structural annotation	PF11367	NA	NA
UHGV-0296494_8	PHROG	phrog_23409	NA	unknown function
UHGV-0296494_8	UniRef90	UniRef90_A0A0A6SE05	HK97 gp10 family phage protein	NA
UHGV-0296494_8	eggNOG-mapper	1440052.EAKF1_ch0458c	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0296494_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0296494_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0296494_8	Structural annotation	TIGR01725	NA	NA
UHGV-0296494_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0296494_9	UniRef90	UniRef90_A0A0G3JU98	Head-tail adaptor protein	NA
UHGV-0296494_9	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0296494_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0296494_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0296494_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0296494_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0296494_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0296494_10	UniRef90	UniRef90_A0A0G3JSG3	Phage gp6-like head-tail connector protein	NA
UHGV-0296494_10	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0296494_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0296494_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0296494_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0296494_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0296494_11	UniRef90	UniRef90_A0A376VIQ7	Prophage major capsid protein	NA
UHGV-0296494_11	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0296494_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0296494_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0296494_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0296494_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0296494_12	KOfam	K06904	NA	NA
UHGV-0296494_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0296494_12	UniRef90	UniRef90_E6BSD6	Phage prohead protease, HK97 family	NA
UHGV-0296494_12	eggNOG-mapper	1082705.JIBP01000010_gene168	Prohead protease	NA
UHGV-0296494_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0296494_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0296494_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0296494_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0296494_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0296494_13	UniRef90	UniRef90_A0A0L7ACU7	Phage portal protein	NA
UHGV-0296494_13	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0296494_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0296494_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0296494_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0296494_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0296494_14	PHROG	phrog_7105	NA	unknown function
UHGV-0296494_14	UniRef90	UniRef90_A0A163XUY0	Membrane protein	NA
UHGV-0296494_14	eggNOG-mapper	520999.PROVALCAL_02013	NA	NA
UHGV-0296494_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0296494_15	UniRef90	UniRef90_A0A4C4IQY6	Phage terminase large subunit	NA
UHGV-0296494_15	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-0296494_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0296494_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0296494_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0296494_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0296494_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0296494_16	UniRef90	UniRef90_A0A0J2B4L5	Phage terminase small subunit P27 family	NA
UHGV-0296494_16	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0296494_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0296494_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0296494_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0296494_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0296494_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0296494_17	UniRef90	UniRef90_A0A0L6XVE5	HNH endonuclease	NA
UHGV-0296494_17	eggNOG-mapper	103807.Q8W633_9CAUD	endonuclease activity	NA
UHGV-0296494_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0296494_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0296494_18	KOfam	K03832	tonB; periplasmic protein TonB	NA
UHGV-0296494_18	PHROG	phrog_1267	Rz-like spanin	lysis
UHGV-0296494_18	UniRef90	UniRef90_A0A2S4AFN2	Protein TonB	NA
UHGV-0296494_18	eggNOG-mapper	199310.c1565	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	NA
UHGV-0296494_18	Pfam	PF03544	Gram-negative bacterial TonB protein C-terminal	TonB_C
UHGV-0296494_18	NCBIFam	TIGR01352.1	TonB family protein	NA
UHGV-0296494_18	COG	COG0810	Periplasmic protein TonB, links inner and outer membranes	NA
UHGV-0296494_18	Structural annotation	PF03544, TIGR01352, COG0810	NA	NA
UHGV-0296494_19	PHROG	phrog_4843	NA	unknown function
UHGV-0296494_20	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0296494_20	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0296494_20	UniRef90	UniRef90_P03707	Terminase small subunit	NA
UHGV-0296494_20	eggNOG-mapper	481805.EcolC_2090	DNA packaging	NA
UHGV-0296494_20	Pfam	PF07471	Phage DNA packaging protein Nu1	Phage_Nu1
UHGV-0296494_20	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0296494_20	Structural annotation	PF07471, MF_01155, NF033499, COG4220	NA	NA
UHGV-0296494_21	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0296494_21	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0296494_21	UniRef90	UniRef90_A0A066T1B1	Phage terminase large subunit family protein	NA
UHGV-0296494_21	eggNOG-mapper	469008.B21_00731	Phage terminase large subunit (GpA)	NA
UHGV-0296494_21	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0296494_21	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0296494_21	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0296494_21	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0296494_21	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0296494_22	PHROG	phrog_75	head-tail adaptor Ad1	connector
UHGV-0296494_22	UniRef90	UniRef90_P68660	Head completion protein	NA
UHGV-0296494_22	eggNOG-mapper	199310.c3172	gpW	NA
UHGV-0296494_22	Pfam	PF02831	gpW	gpW
UHGV-0296494_22	Structural annotation	PF02831	NA	NA
UHGV-0296494_23	PHROG	phrog_21	portal protein	head and packaging
UHGV-0296494_23	UniRef90	UniRef90_A0A1M0PRX5	Phage portal protein	NA
UHGV-0296494_23	eggNOG-mapper	481805.EcolC_2093	Phage portal protein, lambda family	NA
UHGV-0296494_23	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0296494_23	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0296494_23	COG	COG5511	Phage capsid protein	NA
UHGV-0296494_23	HAMAP	MF_04135	Portal protein B [B]	NA
UHGV-0296494_23	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0296494_24	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0296494_24	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0296494_24	UniRef90	UniRef90_A0A2H4TLH1	Minor capsid protein C	NA
UHGV-0296494_24	eggNOG-mapper	155864.EDL933_1829	Peptidase family S49	NA
UHGV-0296494_24	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0296494_24	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0296494_24	Structural annotation	PF01343, PF01740, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0296494_25	PHROG	phrog_49	head decoration	head and packaging
UHGV-0296494_25	UniRef90	UniRef90_A0A066Q586	Head decoration protein	NA
UHGV-0296494_25	eggNOG-mapper	155864.EDL933_1830	Bacteriophage lambda head decoration protein D	NA
UHGV-0296494_25	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0296494_25	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0296494_26	PHROG	phrog_6020	major head protein	head and packaging
UHGV-0296494_26	UniRef90	UniRef90_P03713	Major capsid protein	NA
UHGV-0296494_26	eggNOG-mapper	1116472.MGMO_198c00060	capsid protein	NA
UHGV-0296494_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0296494_26	HAMAP	MF_04133	Major capsid protein [E]	NA
UHGV-0296494_26	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0296494_27	PHROG	phrog_92	DNA packaging chaperone FI	head and packaging
UHGV-0296494_27	UniRef90	UniRef90_P03709	DNA-packaging protein FI	NA
UHGV-0296494_27	eggNOG-mapper	1116472.MGMO_198c00050	DNA packaging protein FI	NA
UHGV-0296494_27	Pfam	PF14000	DNA packaging protein FI	Packaging_FI
UHGV-0296494_27	Structural annotation	PF14000	NA	NA
UHGV-0296494_28	PHROG	phrog_82	head closure Hc1	connector
UHGV-0296494_28	UniRef90	UniRef90_A0A143E853	Minor capsid protein	NA
UHGV-0296494_28	eggNOG-mapper	155864.EDL933_1833	head-tail joining protein of prophage	NA
UHGV-0296494_28	Pfam	PF05354	Phage Head-Tail Attachment	Phage_attach
UHGV-0296494_28	Structural annotation	PF05354, COG5614	NA	NA
UHGV-0296494_29	PHROG	phrog_8274	NA	unknown function
UHGV-0296494_29	UniRef90	UniRef90_B7MEV5	Minor tail protein Z (GpZ)	NA
UHGV-0296494_29	eggNOG-mapper	362663.ECP_1175	prophage	NA
UHGV-0296494_29	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0296494_29	Structural annotation	PF06763	NA	NA
UHGV-0296494_30	PHROG	phrog_37	tail terminator	connector
UHGV-0296494_30	UniRef90	UniRef90_A0A024L3K3	Minor tail protein U	NA
UHGV-0296494_30	eggNOG-mapper	1116472.MGMO_198c00020	Phage minor tail protein U	NA
UHGV-0296494_30	Pfam	PF06141	Phage minor tail protein U	Phage_tail_U
UHGV-0296494_30	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0296494_31	PHROG	phrog_41	major tail protein	tail
UHGV-0296494_31	UniRef90	UniRef90_A0A829GCH9	Major tail protein V	NA
UHGV-0296494_31	eggNOG-mapper	1116472.MGMO_198c00010	Lambda phage tail tube protein, TTP	NA
UHGV-0296494_31	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0296494_31	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0296494_31	COG	COG5492	NA	NA
UHGV-0296494_31	Structural annotation	PF02368, PF06199, MF_04116, TIGR02126, TIGR04225, COG5437	NA	NA
UHGV-0296494_32	PHROG	phrog_11732	NA	unknown function
UHGV-0296494_32	UniRef90	UniRef90_P03734	Tail assembly protein G	NA
UHGV-0296494_32	eggNOG-mapper	469008.B21_00743	tail component of prophage	NA
UHGV-0296494_32	Pfam	PF06894	Bacteriophage lambda tail assembly chaperone, TAC, protein G	Phage_TAC_2
UHGV-0296494_32	NCBIFam	TIGR01674.1	phage minor tail protein G	NA
UHGV-0296494_32	HAMAP	MF_04134	Tail assembly protein GT	NA
UHGV-0296494_32	Structural annotation	PF06894, MF_04134, TIGR01674	NA	NA
UHGV-0296494_33	PHROG	phrog_32165	minor tail protein	tail
UHGV-0296494_33	UniRef90	UniRef90_F0JV83	Tail component	NA
UHGV-0296494_33	eggNOG-mapper	155864.EDL933_1838	Minor tail protein T	NA
UHGV-0296494_33	Pfam	PF06223	Minor tail protein T	Phage_tail_T
UHGV-0296494_33	NCBIFam	TIGR01715.1	phage tail assembly protein T	NA
UHGV-0296494_33	HAMAP	MF_04134	Tail assembly protein GT	NA
UHGV-0296494_33	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0296494_34	PHROG	phrog_24	tail length tape measure protein	tail
UHGV-0296494_34	UniRef90	UniRef90_P03736	Tape measure protein	NA
UHGV-0296494_34	eggNOG-mapper	469008.B21_00745	Escherichia coli O157 H7 ortholog z2140	NA
UHGV-0296494_34	Pfam	PF06791	Prophage tail length tape measure protein	TMP_2
UHGV-0296494_34	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0296494_34	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0296494_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0296494_34	HAMAP	MF_04138	Tape measure protein [H]	NA
UHGV-0296494_34	Structural annotation	PF06791, MF_04138, COG5281	NA	NA
UHGV-0296494_35	PHROG	phrog_21806	minor tail protein	tail
UHGV-0296494_35	UniRef90	UniRef90_A0A061YC41	Phage tail protein	NA
UHGV-0296494_35	eggNOG-mapper	469008.B21_00746	Phage minor tail protein	NA
UHGV-0296494_35	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0296494_35	COG	COG4718	Phage tail protein	NA
UHGV-0296494_35	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0296494_36	PHROG	phrog_4199	minor tail protein	tail
UHGV-0296494_36	UniRef90	UniRef90_P03738	Tail tip protein L	NA
UHGV-0296494_36	eggNOG-mapper	469008.B21_00747	Phage minor tail protein L	NA
UHGV-0296494_36	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0296494_36	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0296494_36	COG	COG4672	Phage tail protein	NA
UHGV-0296494_36	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0296494_37	PHROG	phrog_28576	NA	unknown function
UHGV-0296494_37	eggNOG-mapper	1440052.EAKF1_ch4484	JAB/MPN domain	NA
UHGV-0296494_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA