UHGV-0299036

Genome information

vOTU vOTU-022031

Genome length 39,139 bps

CDS count 64

Completeness 87.42% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0299036
vOTU ID	vOTU-022031
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR2855827_141_88774_round1256~4383892
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.61
Jumbo phage	No

Genome content
Genome length	39,139 bps
GC content	51.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.64%
Average CDS length	558.19 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0299036_2	PHROG	phrog_38044	NA	unknown function
UHGV-0299036_2	eggNOG-mapper	1445858.A0A060AN56_9CAUD	peptidoglycan catabolic process	NA
UHGV-0299036_5	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0299036_5	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0299036_6	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-0299036_6	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0299036_7	PHROG	phrog_1194	NA	unknown function
UHGV-0299036_7	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0299036_7	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0299036_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0299036_8	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0299036_8	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0299036_9	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0299036_10	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0299036_10	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0299036_10	Pfam	PF16478	NA	DUF5055
UHGV-0299036_10	Structural annotation	PF16478	NA	NA
UHGV-0299036_11	PHROG	phrog_158	major tail protein	tail
UHGV-0299036_11	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0299036_11	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0299036_11	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0299036_12	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0299036_13	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0299036_14	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0299036_15	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0299036_15	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0299036_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0299036_15	Structural annotation	TIGR01560	NA	NA
UHGV-0299036_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0299036_16	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0299036_16	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0299036_16	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0299036_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0299036_19	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0299036_19	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0299036_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0299036_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0299036_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0299036_20	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0299036_20	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0299036_20	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0299036_20	COG	COG5410	NA	NA
UHGV-0299036_20	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0299036_21	PHROG	phrog_1233	NA	unknown function
UHGV-0299036_21	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0299036_21	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0299036_24	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0299036_24	Structural annotation	TIGR03826	NA	NA
UHGV-0299036_25	Structural annotation	PF12869, MF_00720, NF040991, COG4085	NA	NA
UHGV-0299036_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0299036_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0299036_26	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0299036_26	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0299036_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0299036_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0299036_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0299036_26	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0299036_28	PHROG	phrog_4273	NA	unknown function
UHGV-0299036_28	eggNOG-mapper	1415147.V5Q8T2_9CAUD	NA	NA
UHGV-0299036_29	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0299036_29	Structural annotation	PF18267	NA	NA
UHGV-0299036_31	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0299036_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0299036_34	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0299036_34	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-0299036_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0299036_34	Structural annotation	PF16677	NA	NA
UHGV-0299036_41	PHROG	phrog_13321	NA	unknown function
UHGV-0299036_41	UniRef90	UniRef90_UPI00030D2C45	radical SAM protein	NA
UHGV-0299036_41	eggNOG-mapper	1007096.BAGW01000031_gene122	PFAM Radical SAM	NA
UHGV-0299036_41	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0299036_41	COG	COG1533	DNA repair photolyase	NA
UHGV-0299036_41	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-0299036_43	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0299036_43	UniRef90	UniRef90_A0A173SAG0	Restriction alleviation protein, Lar family	NA
UHGV-0299036_43	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0299036_43	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0299036_43	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0299036_43	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0299036_43	Structural annotation	PF13211	NA	NA
UHGV-0299036_44	PHROG	phrog_3136	NA	unknown function
UHGV-0299036_44	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0299036_44	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0299036_46	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0299036_46	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0299036_46	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0299036_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0299036_46	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0299036_47	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0299036_47	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0299036_47	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0299036_47	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0299036_47	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0299036_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0299036_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0299036_47	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0299036_49	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0299036_49	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0299036_49	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0299036_49	eggNOG-mapper	411467.BACCAP_02469	Bacterial dnaA protein	NA
UHGV-0299036_49	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0299036_49	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0299036_49	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0299036_49	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0299036_50	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0299036_50	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-0299036_50	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0299036_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0299036_50	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0299036_51	PHROG	phrog_4973	NA	unknown function
UHGV-0299036_51	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0299036_51	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0299036_51	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0299036_51	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0299036_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0299036_52	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0299036_52	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0299036_52	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0299036_52	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0299036_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0299036_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0299036_53	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-0299036_53	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0299036_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0299036_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0299036_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0299036_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0299036_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0299036_55	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0299036_55	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0299036_55	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0299036_55	eggNOG-mapper	40521.Q9T172_BPA18	DNA metabolic process	NA
UHGV-0299036_55	Pfam	PF03837	RecT family	RecT
UHGV-0299036_55	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0299036_55	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0299036_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0299036_56	UniRef90	UniRef90_UPI00164B76E0	YqaJ viral recombinase family protein	NA
UHGV-0299036_56	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0299036_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0299036_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0299036_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0299036_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0299036_60	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0299036_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0299036_62	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0299036_62	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0299036_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0299036_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0299036_62	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0299036_63	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0299036_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0299036_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0299036_64	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0299036_64	eggNOG-mapper	665956.HMPREF1032_01888	NA	NA
UHGV-0299036_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0299036_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-0299036_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0299036_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0299036_64	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA