UHGV-0301234

Genome information

vOTU vOTU-062001

Genome length 36,832 bps

CDS count 58

Completeness 94.50% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0301234
vOTU ID	vOTU-062001
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_150_round13~6055513
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.06
Jumbo phage	No

Genome content
Genome length	36,832 bps
GC content	38.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.63%
Average CDS length	584.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0301234_1	PHROG	phrog_1296	holin	lysis
UHGV-0301234_1	UniRef90	UniRef90_A0A0M9FH77	Phage membrane protein	NA
UHGV-0301234_2	PHROG	phrog_1554	NA	unknown function
UHGV-0301234_2	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-0301234_2	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0301234_2	Structural annotation	PF07104	NA	NA
UHGV-0301234_4	PHROG	phrog_2270	NA	unknown function
UHGV-0301234_4	UniRef90	UniRef90_A0A4Q2FE36	Prophage_tail domain-containing protein	NA
UHGV-0301234_4	eggNOG-mapper	999425.HMPREF9186_02047	Phage minor structural protein	NA
UHGV-0301234_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0301234_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0301234_4	COG	COG1511	NA	NA
UHGV-0301234_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0301234_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0301234_5	UniRef90	UniRef90_A0A8B1YSX1	Phage tail family protein	NA
UHGV-0301234_5	eggNOG-mapper	999425.HMPREF9186_02046	NA	NA
UHGV-0301234_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0301234_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0301234_6	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0301234_6	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0301234_6	UniRef90	UniRef90_A0A1F1A2Q2	PhageMin_Tail domain-containing protein	NA
UHGV-0301234_6	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-0301234_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0301234_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0301234_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0301234_6	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0301234_8	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0301234_8	UniRef90	UniRef90_A0A139NGQ9	Putative phage protein	NA
UHGV-0301234_9	UniRef90	UniRef90_A0A1F1DLF7	NA	NA
UHGV-0301234_9	Structural annotation	PF11611, MF_00791, COG2967	NA	NA
UHGV-0301234_10	PHROG	phrog_88	major tail protein	tail
UHGV-0301234_10	UniRef90	UniRef90_K8MEB4	Phi13 family phage major tail protein	NA
UHGV-0301234_10	eggNOG-mapper	1035189.HMPREF9954_1930	Phage tail tube protein	NA
UHGV-0301234_10	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0301234_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0301234_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0301234_11	PHROG	phrog_78	tail terminator	connector
UHGV-0301234_11	UniRef90	UniRef90_A0A139RIS6	Putative phage protein	NA
UHGV-0301234_11	eggNOG-mapper	999425.HMPREF9186_02040	NA	NA
UHGV-0301234_11	Structural annotation	PF05657	NA	NA
UHGV-0301234_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0301234_12	UniRef90	UniRef90_A0A139RIK3	NA	NA
UHGV-0301234_12	eggNOG-mapper	565653.EGBG_01973	NA	NA
UHGV-0301234_12	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0301234_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0301234_13	UniRef90	UniRef90_A0A8B1YLH5	Phage head-tail adapter protein	NA
UHGV-0301234_13	eggNOG-mapper	999425.HMPREF9186_02038	NA	NA
UHGV-0301234_13	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0301234_14	PHROG	phrog_933	NA	unknown function
UHGV-0301234_15	PHROG	phrog_749	NA	unknown function
UHGV-0301234_15	UniRef90	UniRef90_A0A8B1YLI6	Phage gp6-like head-tail connector protein	NA
UHGV-0301234_15	eggNOG-mapper	999425.HMPREF9186_02036	NA	NA
UHGV-0301234_15	Structural annotation	TIGR01560	NA	NA
UHGV-0301234_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0301234_16	UniRef90	UniRef90_A0A4D6B0J4	Major capsid protein	NA
UHGV-0301234_16	eggNOG-mapper	999425.HMPREF9186_02035	Phage capsid family	NA
UHGV-0301234_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0301234_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0301234_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0301234_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0301234_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0301234_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0301234_17	UniRef90	UniRef90_A0A428HZ00	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0301234_17	eggNOG-mapper	999425.HMPREF9186_02034	Belongs to the peptidase S14 family	NA
UHGV-0301234_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0301234_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0301234_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0301234_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0301234_18	UniRef90	UniRef90_A0A4D6B0L6	Portal protein	NA
UHGV-0301234_18	eggNOG-mapper	999425.HMPREF9186_02033	portal protein	NA
UHGV-0301234_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0301234_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0301234_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0301234_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0301234_19	PHROG	phrog_903	NA	unknown function
UHGV-0301234_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0301234_20	UniRef90	UniRef90_X8K5U6	Putative phage terminase, large subunit	NA
UHGV-0301234_20	eggNOG-mapper	999425.HMPREF9186_02031	Terminase	NA
UHGV-0301234_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0301234_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0301234_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0301234_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0301234_21	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-0301234_21	UniRef90	UniRef90_A0A5C5TE72	P27 family phage terminase small subunit	NA
UHGV-0301234_21	eggNOG-mapper	999425.HMPREF9186_02030	NA	NA
UHGV-0301234_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0301234_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0301234_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0301234_22	UniRef90	UniRef90_A0A4D6AD72	Site-specific recombinase	NA
UHGV-0301234_22	eggNOG-mapper	999425.HMPREF9186_02028	Phage integrase family	NA
UHGV-0301234_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0301234_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0301234_23	UniRef90	UniRef90_K8MR92	RinA family phage transcriptional regulator	NA
UHGV-0301234_23	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0301234_23	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0301234_24	PHROG	phrog_29132	NA	unknown function
UHGV-0301234_26	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0301234_26	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0301234_27	UniRef90	UniRef90_F9PY74	Conserved domain protein	NA
UHGV-0301234_28	PHROG	phrog_3606	NA	unknown function
UHGV-0301234_28	AcrCatalog	cluster_1646	NA	NA
UHGV-0301234_29	PHROG	phrog_98	NA	unknown function
UHGV-0301234_29	UniRef90	UniRef90_K8ME96	YopX domain-containing protein	NA
UHGV-0301234_29	eggNOG-mapper	1035189.HMPREF9954_1949	YopX protein	NA
UHGV-0301234_29	Pfam	PF09643	YopX protein	YopX
UHGV-0301234_29	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0301234_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0301234_30	PHROG	phrog_20205	NA	unknown function
UHGV-0301234_31	PHROG	phrog_2715	NA	unknown function
UHGV-0301234_31	UniRef90	UniRef90_U4KJB3	NA	NA
UHGV-0301234_31	eggNOG-mapper	999425.HMPREF9186_02019	NA	NA
UHGV-0301234_31	Structural annotation	PF18406	NA	NA
UHGV-0301234_32	PHROG	phrog_121	NA	unknown function
UHGV-0301234_32	UniRef90	UniRef90_UPI001CC1992A	NA	NA
UHGV-0301234_32	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0301234_32	Pfam	PF07852	NA	DUF1642
UHGV-0301234_32	Structural annotation	PF07852	NA	NA
UHGV-0301234_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0301234_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0301234_33	UniRef90	UniRef90_A0A1F1A3M4	HTH cro/C1-type domain-containing protein	NA
UHGV-0301234_33	eggNOG-mapper	1235801.C822_00419	Helix-turn-helix XRE-family like proteins	NA
UHGV-0301234_33	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0301234_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0301234_33	Structural annotation	PF12844, MF_00535, NF041575, COG1476	NA	NA
UHGV-0301234_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0301234_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0301234_34	UniRef90	UniRef90_A0A1F1A2V8	HTH cro/C1-type domain-containing protein	NA
UHGV-0301234_34	eggNOG-mapper	873447.SPB_1463	transcriptional	NA
UHGV-0301234_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301234_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0301234_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0301234_35	PHROG	phrog_121	NA	unknown function
UHGV-0301234_35	UniRef90	UniRef90_A0A8B1YVT4	NA	NA
UHGV-0301234_35	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0301234_35	Pfam	PF07852	NA	DUF1642
UHGV-0301234_35	Structural annotation	PF07852	NA	NA
UHGV-0301234_36	UniRef90	UniRef90_A0A4D6A8K3	Cell wall-associated protein WapA	NA
UHGV-0301234_36	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-0301234_36	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0301234_36	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0301234_36	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0301234_36	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-0301234_37	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0301234_37	UniRef90	UniRef90_A0A1F0KA74	DNA-binding protein	NA
UHGV-0301234_37	eggNOG-mapper	999425.HMPREF9186_02016	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0301234_37	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0301234_37	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0301234_38	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0301234_38	UniRef90	UniRef90_K8MJ90	HTH cro/C1-type domain-containing protein	NA
UHGV-0301234_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301234_38	Structural annotation	PF01381, MF_00535, NF041575, COG3655	NA	NA
UHGV-0301234_39	PHROG	phrog_1580	NA	unknown function
UHGV-0301234_40	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0301234_40	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0301234_40	UniRef90	UniRef90_K8MKF4	DnaD and phage-associated domain-containing protein	NA
UHGV-0301234_40	eggNOG-mapper	999425.HMPREF9186_02013	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0301234_40	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0301234_40	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0301234_40	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0301234_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0301234_40	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0301234_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0301234_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0301234_41	UniRef90	UniRef90_A0A414CIJ1	Single-stranded DNA-binding protein	NA
UHGV-0301234_41	eggNOG-mapper	999425.HMPREF9186_02012	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0301234_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0301234_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0301234_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0301234_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0301234_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0301234_42	PHROG	phrog_236	nucleotide kinase	other
UHGV-0301234_42	UniRef90	UniRef90_A0A414CII1	NA	NA
UHGV-0301234_42	eggNOG-mapper	999425.HMPREF9186_02011	NA	NA
UHGV-0301234_42	Pfam	PF11753	NA	DUF3310
UHGV-0301234_46	PHROG	phrog_5866	NA	unknown function
UHGV-0301234_46	UniRef90	UniRef90_A0A4Q2FFR2	HTH merR-type domain-containing protein	NA
UHGV-0301234_46	eggNOG-mapper	35344.A0A097PAT8_BPT12	NA	NA
UHGV-0301234_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0301234_47	PHROG	phrog_28560	NA	unknown function
UHGV-0301234_49	PHROG	phrog_9949	NA	unknown function
UHGV-0301234_49	AcrCatalog	cluster_10982	NA	NA
UHGV-0301234_50	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0301234_50	UniRef90	UniRef90_K8MKE3	ORF6C domain-containing protein	NA
UHGV-0301234_50	eggNOG-mapper	999425.HMPREF9186_02003	ORF6C domain	NA
UHGV-0301234_50	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0301234_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0301234_50	Structural annotation	PF10552	NA	NA
UHGV-0301234_51	PHROG	phrog_1733	NA	unknown function
UHGV-0301234_51	UniRef90	UniRef90_A0A8B1YLF4	NA	NA
UHGV-0301234_51	eggNOG-mapper	646413.C5IUM1_9CAUD	NA	NA
UHGV-0301234_51	Pfam	PF11300	NA	DUF3102
UHGV-0301234_51	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0301234_52	PHROG	phrog_585	NA	unknown function
UHGV-0301234_52	UniRef90	UniRef90_UPI001EDED3D1	NA	NA
UHGV-0301234_52	eggNOG-mapper	999425.HMPREF9186_02001	NA	NA
UHGV-0301234_52	Pfam	PF10711	NA	DUF2513
UHGV-0301234_52	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0301234_53	UniRef90	UniRef90_K8MJ75	HTH cro/C1-type domain-containing protein	NA
UHGV-0301234_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301234_53	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0301234_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0301234_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0301234_54	UniRef90	UniRef90_K8MMQ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0301234_54	eggNOG-mapper	999425.HMPREF9186_01999	Transcriptional regulator	NA
UHGV-0301234_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301234_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0301234_54	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0301234_55	PHROG	phrog_87	metallo-protease	other
UHGV-0301234_55	UniRef90	UniRef90_A0A1F0YCC0	Peptidase_M78 domain-containing protein	NA
UHGV-0301234_55	eggNOG-mapper	173707.Q938N7_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0301234_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0301234_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0301234_56	UniRef90	UniRef90_A0A1F1A2U3	NA	NA
UHGV-0301234_56	eggNOG-mapper	1460634.JCM19037_1434	Short C-terminal domain	NA
UHGV-0301234_56	Pfam	PF14472	NA	DUF4429
UHGV-0301234_57	KOfam	K14059	int; integrase	NA
UHGV-0301234_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0301234_57	UniRef90	UniRef90_A0A4D6A9L0	Integrase	NA
UHGV-0301234_57	eggNOG-mapper	999425.HMPREF9186_01996	Belongs to the 'phage' integrase family	NA
UHGV-0301234_57	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0301234_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0301234_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0301234_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0301234_57	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0301234_58	PHROG	phrog_20163	NA	unknown function
UHGV-0301234_58	UniRef90	UniRef90_I2NTU1	ABC transporter, ATP-binding family protein	NA
UHGV-0301234_58	eggNOG-mapper	1316408.HSISM1_791	NA	NA
UHGV-0301234_58	COG	COG1131	ABC-type multidrug transport system, ATPase component	NA