UHGV-0301357

Genome information

Genome length 38,399 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0301357
vOTU ID	vOTU-064897
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	DRR003616_119_22302_round1256~5760816
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.07
Jumbo phage	No

Genome content
Genome length	38,399 bps
GC content	41.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	95.02%
Average CDS length	612.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0301357_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0301357_1	UniRef90	UniRef90_UPI001D05BF46	helix-turn-helix domain-containing protein	NA
UHGV-0301357_1	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0301357_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0301357_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0301357_2	PHROG	phrog_10797	NA	unknown function
UHGV-0301357_2	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0301357_2	Structural annotation	PF06531	NA	NA
UHGV-0301357_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0301357_3	PHROG	phrog_435	endolysin	lysis
UHGV-0301357_3	UniRef90	UniRef90_A0A833CAF1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0301357_3	eggNOG-mapper	546271.Selsp_1309	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0301357_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0301357_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0301357_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0301357_4	PHROG	phrog_27828	NA	unknown function
UHGV-0301357_4	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0301357_4	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0301357_7	UniRef90	UniRef90_R5BVD3	Tail fiber protein gpH	NA
UHGV-0301357_7	eggNOG-mapper	556268.OFAG_00371	Phage tail-collar fibre protein	NA
UHGV-0301357_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0301357_8	PHROG	phrog_4757	NA	unknown function
UHGV-0301357_8	UniRef90	UniRef90_R5BIW6	Phage capside-related protein	NA
UHGV-0301357_8	eggNOG-mapper	1121377.KB906398_gene1973	Phage portal protein, lambda family	NA
UHGV-0301357_8	COG	COG5511	Phage capsid protein	NA
UHGV-0301357_10	PHROG	phrog_1084	NA	unknown function
UHGV-0301357_10	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-0301357_11	PHROG	phrog_19099	NA	unknown function
UHGV-0301357_11	UniRef90	UniRef90_A0A1B1I043	Betaine-aldehyde dehydrogenase	NA
UHGV-0301357_11	eggNOG-mapper	679201.HMPREF9334_00336	NA	NA
UHGV-0301357_12	PHROG	phrog_4062	NA	unknown function
UHGV-0301357_13	PHROG	phrog_2427	NA	unknown function
UHGV-0301357_14	PHROG	phrog_1101	tail protein	tail
UHGV-0301357_14	UniRef90	UniRef90_A0A6N3AI17	Phage-tail_3 domain-containing protein	NA
UHGV-0301357_14	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-0301357_14	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0301357_14	COG	COG1511	NA	NA
UHGV-0301357_14	Structural annotation	PF13550, PF05895, NF040662, TIGR03503, COG4733	NA	NA
UHGV-0301357_15	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0301357_15	PHROG	phrog_329	minor tail protein	tail
UHGV-0301357_15	UniRef90	UniRef90_R5BRP2	NlpC/P60 domain-containing protein	NA
UHGV-0301357_15	eggNOG-mapper	706434.HMPREF9429_00514	cysteine-type peptidase activity	NA
UHGV-0301357_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0301357_15	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0301357_16	PHROG	phrog_778	tail assembly protein	tail
UHGV-0301357_16	UniRef90	UniRef90_UPI000FD6930E	NA	NA
UHGV-0301357_16	eggNOG-mapper	706434.HMPREF9429_00515	NA	NA
UHGV-0301357_16	Pfam	PF09931	NA	DUF2163
UHGV-0301357_16	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0301357_16	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0301357_16	COG	COG5449	NA	NA
UHGV-0301357_16	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0301357_17	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0301357_17	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-0301357_17	eggNOG-mapper	706434.HMPREF9429_00516	NA	NA
UHGV-0301357_17	Pfam	PF09343	NA	DUF2460
UHGV-0301357_17	COG	COG5448	NA	NA
UHGV-0301357_17	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0301357_18	PHROG	phrog_12798	NA	unknown function
UHGV-0301357_18	UniRef90	UniRef90_A0A833C9V1	Tape measure protein	NA
UHGV-0301357_18	eggNOG-mapper	706434.HMPREF9429_00517	tape measure	NA
UHGV-0301357_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0301357_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0301357_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0301357_18	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0301357_19	PHROG	phrog_7377	NA	unknown function
UHGV-0301357_20	PHROG	phrog_2115	tail protein	tail
UHGV-0301357_20	eggNOG-mapper	1232428.CAVO010000021_gene798	NA	NA
UHGV-0301357_20	Structural annotation	PF19591	NA	NA
UHGV-0301357_21	PHROG	phrog_1407	major tail protein	tail
UHGV-0301357_21	UniRef90	UniRef90_R5BIZ0	Phage major tail protein TP901-1 family	NA
UHGV-0301357_21	eggNOG-mapper	706434.HMPREF9429_00520	Phage tail tube protein	NA
UHGV-0301357_21	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0301357_21	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0301357_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0301357_22	PHROG	phrog_18864	NA	unknown function
UHGV-0301357_22	UniRef90	UniRef90_F5RMR0	Phosphoribosyl pyrophosphate synthetase	NA
UHGV-0301357_22	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0301357_23	PHROG	phrog_19017	NA	unknown function
UHGV-0301357_23	eggNOG-mapper	706434.HMPREF9429_00522	NA	NA
UHGV-0301357_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0301357_24	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-0301357_24	eggNOG-mapper	387092.NIS_0469	Phage virion morphogenesis	NA
UHGV-0301357_24	COG	COG5005	NA	NA
UHGV-0301357_24	Structural annotation	TIGR01725	NA	NA
UHGV-0301357_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-0301357_26	UniRef90	UniRef90_R5BRS0	Lj928 prophage protein	NA
UHGV-0301357_26	eggNOG-mapper	1123489.AUAN01000010_gene359	NA	NA
UHGV-0301357_26	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0301357_27	PHROG	phrog_206	head scaffolding protein	head and packaging
UHGV-0301357_27	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0301357_27	eggNOG-mapper	1123489.AUAN01000010_gene360	NA	NA
UHGV-0301357_27	Structural annotation	PF06810	NA	NA
UHGV-0301357_28	PHROG	phrog_1865	NA	unknown function
UHGV-0301357_29	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0301357_29	UniRef90	UniRef90_R5BIR3	Ntox50 domain-containing protein	NA
UHGV-0301357_29	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0301357_29	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0301357_29	Structural annotation	PF18451	NA	NA
UHGV-0301357_30	PHROG	phrog_145	portal protein	head and packaging
UHGV-0301357_30	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0301357_30	eggNOG-mapper	1123489.AUAN01000010_gene363	NA	NA
UHGV-0301357_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0301357_31	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0301357_31	UniRef90	UniRef90_A0A833FGT9	Phage terminase large subunit	NA
UHGV-0301357_31	eggNOG-mapper	1123489.AUAN01000010_gene364	TIGRFAM Phage	NA
UHGV-0301357_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0301357_31	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0301357_31	COG	COG5410	NA	NA
UHGV-0301357_31	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0301357_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0301357_32	UniRef90	UniRef90_UPI001D046382	helix-turn-helix domain-containing protein	NA
UHGV-0301357_32	eggNOG-mapper	1123489.AUAN01000010_gene365	transposase activity	NA
UHGV-0301357_32	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0301357_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0301357_32	Structural annotation	PF07141	NA	NA
UHGV-0301357_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0301357_33	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0301357_33	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-0301357_33	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0301357_34	PHROG	phrog_6568	NA	unknown function
UHGV-0301357_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0301357_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0301357_36	UniRef90	UniRef90_A0A6N3AK63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0301357_36	eggNOG-mapper	1294142.CINTURNW_1015	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0301357_36	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0301357_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0301357_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0301357_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0301357_36	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0301357_39	PHROG	phrog_21026	NA	unknown function
UHGV-0301357_40	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0301357_40	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0301357_40	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0301357_40	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0301357_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0301357_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0301357_41	UniRef90	UniRef90_A0A6N3AU65	Methyltransferase	NA
UHGV-0301357_41	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0301357_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0301357_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0301357_41	COG	COG0863	DNA modification methylase	NA
UHGV-0301357_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0301357_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0301357_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0301357_42	UniRef90	UniRef90_A0A6N3AKS4	Single-stranded DNA-binding protein	NA
UHGV-0301357_42	eggNOG-mapper	883156.HMPREF9282_00310	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0301357_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0301357_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0301357_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0301357_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0301357_42	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0301357_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0301357_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0301357_43	UniRef90	UniRef90_A0A6N3ANR8	AAA domain-containing protein	NA
UHGV-0301357_43	eggNOG-mapper	871968.DESME_09735	DNA-dependent DNA replication	NA
UHGV-0301357_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0301357_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0301357_43	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0301357_44	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0301357_44	UniRef90	UniRef90_UPI000F8CC09C	NA	NA
UHGV-0301357_44	eggNOG-mapper	706434.HMPREF9429_00772	NA	NA
UHGV-0301357_44	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0301357_44	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0301357_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0301357_44	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0301357_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0301357_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0301357_45	UniRef90	UniRef90_A0A6N3AQZ6	Recombination and repair protein RecT	NA
UHGV-0301357_45	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0301357_45	Pfam	PF03837	RecT family	RecT
UHGV-0301357_45	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0301357_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0301357_45	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0301357_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0301357_46	UniRef90	UniRef90_R5BWZ6	Putative phage-type endonuclease subfamily	NA
UHGV-0301357_46	eggNOG-mapper	1120985.AUMI01000019_gene2252	YqaJ viral recombinase family protein	NA
UHGV-0301357_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0301357_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0301357_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0301357_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0301357_52	PHROG	phrog_6058	NA	unknown function
UHGV-0301357_52	UniRef90	UniRef90_A0A0J6ZJX1	HTH_17 domain-containing protein	NA
UHGV-0301357_52	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0301357_53	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0301357_53	UniRef90	UniRef90_F2JNW6	NA	NA
UHGV-0301357_53	eggNOG-mapper	642492.Clole_0731	NA	NA
UHGV-0301357_53	Pfam	PF13643	NA	DUF4145
UHGV-0301357_53	Structural annotation	PF13643	NA	NA
UHGV-0301357_54	PHROG	phrog_14088	NA	unknown function
UHGV-0301357_54	UniRef90	UniRef90_A0A3E3DUP9	Carboxypeptidase	NA
UHGV-0301357_54	eggNOG-mapper	642492.Clole_1841	NA	NA
UHGV-0301357_56	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0301357_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0301357_56	UniRef90	UniRef90_R5BKN7	HTH cro/C1-type domain-containing protein	NA
UHGV-0301357_56	eggNOG-mapper	650150.ERH_0585	Helix-turn-helix XRE-family like proteins	NA
UHGV-0301357_56	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0301357_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0301357_57	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0301357_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0301357_57	UniRef90	UniRef90_R5BPL4	Putative transcriptional regulator	NA
UHGV-0301357_57	eggNOG-mapper	768710.DesyoDRAFT_5259	PFAM helix-turn-helix	NA
UHGV-0301357_57	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0301357_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301357_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0301357_57	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0301357_58	PHROG	phrog_87	metallo-protease	other
UHGV-0301357_58	UniRef90	UniRef90_R5BTS1	Peptidase_M78 domain-containing protein	NA
UHGV-0301357_58	eggNOG-mapper	883156.HMPREF9282_01206	NA	NA
UHGV-0301357_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0301357_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0301357_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0301357_59	PHROG	phrog_5978	NA	unknown function
UHGV-0301357_59	UniRef90	UniRef90_UPI001D05A9B2	Fic family protein	NA
UHGV-0301357_59	eggNOG-mapper	411465.PEPMIC_00508	Fic/DOC family	NA
UHGV-0301357_59	Pfam	PF13784	Fic/DOC family N-terminal	Fic_N
UHGV-0301357_59	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0301357_59	COG	COG3177	Fic family protein	NA
UHGV-0301357_59	Structural annotation	PF02661, PF13784, PF21248, MF_01819, NF040876, COG3177	NA	NA
UHGV-0301357_60	KOfam	K14059	int; integrase	NA
UHGV-0301357_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0301357_60	UniRef90	UniRef90_R5BZY1	Site-specific recombinase phage integrase family	NA
UHGV-0301357_60	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0301357_60	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0301357_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0301357_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0301357_60	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA