UHGV-0301418

Genome information

vOTU vOTU-011914

Genome length 42,106 bps

CDS count 66

Completeness 95.68% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0301418
vOTU ID	vOTU-011914
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8506103_141_54448_round8-12~2114269
BioSample	SAMN06115530
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	91.83
Jumbo phage	No

Genome content
Genome length	42,106 bps
GC content	33.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.98%
Average CDS length	577.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0301418_1	UniRef90	UniRef90_A0A7X2ST71	XkdX family protein	NA
UHGV-0301418_1	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0301418_1	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0301418_2	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0301418_2	UniRef90	UniRef90_UPI0013708FC6	coiled-coil domain-containing protein 22	NA
UHGV-0301418_3	UniRef90	UniRef90_V6DL81	Putative phage related protein	NA
UHGV-0301418_4	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0301418_4	UniRef90	UniRef90_UPI00136C6BB0	BppU family phage baseplate upper protein	NA
UHGV-0301418_4	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-0301418_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0301418_4	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0301418_4	Structural annotation	PF18667, PF10651	NA	NA
UHGV-0301418_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0301418_6	PHROG	phrog_291	endolysin	lysis
UHGV-0301418_6	UniRef90	UniRef90_A0JQN7	Phage lysin	NA
UHGV-0301418_6	eggNOG-mapper	1605.Lani381_0871	Prophage endopeptidase tail	NA
UHGV-0301418_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0301418_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0301418_6	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0301418_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0301418_7	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0301418_7	UniRef90	UniRef90_A0A222W278	Peptidase M23	NA
UHGV-0301418_7	eggNOG-mapper	1423755.BAML01000004_gene372	peptidase	NA
UHGV-0301418_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0301418_7	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0301418_8	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0301418_8	eggNOG-mapper	1423755.BAML01000004_gene372	peptidase	NA
UHGV-0301418_8	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0301418_8	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0301418_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0301418_9	UniRef90	UniRef90_UPI000A2D25C0	phage tail family protein	NA
UHGV-0301418_9	eggNOG-mapper	349123.Lreu23DRAFT_3168	Phage tail protein	NA
UHGV-0301418_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0301418_9	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0301418_10	KOfam	K21688	rpfB; resuscitation-promoting factor RpfB	NA
UHGV-0301418_10	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0301418_10	UniRef90	UniRef90_A0A1V9U1J6	Phage tail tape measure protein	NA
UHGV-0301418_10	eggNOG-mapper	862514.HMPREF0623_0296	Phage tail tape measure protein TP901	NA
UHGV-0301418_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0301418_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0301418_10	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0301418_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0301418_11	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0301418_12	PHROG	phrog_88	major tail protein	tail
UHGV-0301418_12	UniRef90	UniRef90_A0JQN1	Phage major tail protein	NA
UHGV-0301418_12	eggNOG-mapper	1158614.I592_00627	Phage tail tube protein	NA
UHGV-0301418_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0301418_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0301418_13	PHROG	phrog_78	tail terminator	connector
UHGV-0301418_13	UniRef90	UniRef90_A0JQN0	Phage head-tail joining protein	NA
UHGV-0301418_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0301418_14	UniRef90	UniRef90_A0A828C1M8	Phage protein, HK97 gp10 family	NA
UHGV-0301418_14	eggNOG-mapper	1178540.BA70_12775	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0301418_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0301418_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0301418_14	Structural annotation	TIGR01725	NA	NA
UHGV-0301418_15	UniRef90	UniRef90_A0JQM8	Phage head-tail joining protein	NA
UHGV-0301418_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0301418_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0301418_16	UniRef90	UniRef90_A0JQM7	Phage DNA packaging	NA
UHGV-0301418_16	eggNOG-mapper	411465.PEPMIC_00008	Phage gp6-like head-tail connector protein	NA
UHGV-0301418_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0301418_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0301418_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0301418_17	UniRef90	UniRef90_A0JQM6	Phage prohead protease	NA
UHGV-0301418_17	eggNOG-mapper	768486.EHR_00635	Phage capsid family	NA
UHGV-0301418_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0301418_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0301418_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0301418_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0301418_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0301418_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0301418_18	UniRef90	UniRef90_A0JQM5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0301418_18	eggNOG-mapper	1462526.BN990_01852	Belongs to the peptidase S14 family	NA
UHGV-0301418_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0301418_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0301418_18	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0301418_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0301418_19	UniRef90	UniRef90_A0JQM4	Portal protein	NA
UHGV-0301418_19	eggNOG-mapper	272562.CA_C1894	Phage portal protein, HK97 family	NA
UHGV-0301418_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0301418_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0301418_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0301418_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0301418_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0301418_20	UniRef90	UniRef90_A0JQM3	Terminase large subunit	NA
UHGV-0301418_20	eggNOG-mapper	1348908.KI518589_gene2540	Terminase	NA
UHGV-0301418_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0301418_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0301418_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0301418_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0301418_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0301418_21	UniRef90	UniRef90_A0JQM2	Phage Terminase Small Subunit	NA
UHGV-0301418_21	eggNOG-mapper	431943.CKL_4070	Phage terminase, small subunit	NA
UHGV-0301418_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0301418_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0301418_21	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0301418_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0301418_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0301418_23	UniRef90	UniRef90_UPI00136E3FC9	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0301418_23	eggNOG-mapper	1069534.LRC_07220	NA	NA
UHGV-0301418_23	Structural annotation	PF07374, MF_00674, NF001066, COG2739	NA	NA
UHGV-0301418_25	PHROG	phrog_918	NA	unknown function
UHGV-0301418_25	UniRef90	UniRef90_UPI001370EB75	NA	NA
UHGV-0301418_25	eggNOG-mapper	226185.EF_1459	NA	NA
UHGV-0301418_25	Pfam	PF19791	NA	DUF6275
UHGV-0301418_25	Structural annotation	PF19791	NA	NA
UHGV-0301418_26	PHROG	phrog_2668	NA	unknown function
UHGV-0301418_26	UniRef90	UniRef90_A0A6N9IQ29	Restriction endonuclease subunit S	NA
UHGV-0301418_26	eggNOG-mapper	1201292.DR75_1653	Type I restriction modification DNA specificity domain	NA
UHGV-0301418_26	PADLOC	Specificity_I_00134	Type I specificity subunit	RM
UHGV-0301418_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0301418_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0301418_27	UniRef90	UniRef90_A0A2U2M9F5	N-6 DNA methylase	NA
UHGV-0301418_27	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0301418_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0301418_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0301418_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0301418_27	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0301418_30	PHROG	phrog_36988	NA	unknown function
UHGV-0301418_30	UniRef90	UniRef90_A0A1D7TSQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0301418_30	Structural annotation	PF08667, MF_00535, NF010465, COG1396	NA	NA
UHGV-0301418_32	PHROG	phrog_1455	NA	unknown function
UHGV-0301418_32	eggNOG-mapper	1605.Lani381_0396	NA	NA
UHGV-0301418_32	Pfam	PF21793	NA	DUF6877
UHGV-0301418_32	Structural annotation	PF21793	NA	NA
UHGV-0301418_34	PHROG	phrog_7591	NA	unknown function
UHGV-0301418_36	UniRef90	UniRef90_UPI00136B54E7	helix-turn-helix domain-containing protein	NA
UHGV-0301418_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301418_36	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-0301418_41	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0301418_41	UniRef90	UniRef90_A0A8F5E951	NA	NA
UHGV-0301418_41	eggNOG-mapper	1423724.BAMM01000020_gene1814	NA	NA
UHGV-0301418_41	Pfam	PF06356	NA	DUF1064
UHGV-0301418_41	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0301418_43	PHROG	phrog_1029	NA	unknown function
UHGV-0301418_43	eggNOG-mapper	1158614.I592_02291	NA	NA
UHGV-0301418_43	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0301418_44	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0301418_44	UniRef90	UniRef90_A0A8F5I1F8	Replication terminator protein	NA
UHGV-0301418_44	eggNOG-mapper	1231336.L248_2133	NA	NA
UHGV-0301418_45	eggNOG-mapper	1423724.BAMM01000020_gene1810	NA	NA
UHGV-0301418_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0301418_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0301418_46	UniRef90	UniRef90_A0A1V9TNF7	SF4 helicase domain-containing protein	NA
UHGV-0301418_46	eggNOG-mapper	1423724.BAMM01000020_gene1809	DnaB-like helicase C terminal domain	NA
UHGV-0301418_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0301418_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-0301418_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0301418_47	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0301418_47	UniRef90	UniRef90_UPI00191FAB83	conserved phage C-terminal domain-containing protein	NA
UHGV-0301418_47	eggNOG-mapper	1220551.SCHR_00760	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0301418_47	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0301418_47	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0301418_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0301418_48	PHROG	phrog_398	NA	unknown function
UHGV-0301418_48	UniRef90	UniRef90_UPI000BB0124B	putative HNHc nuclease	NA
UHGV-0301418_48	eggNOG-mapper	1423724.BAMM01000020_gene1807	Putative HNHc nuclease	NA
UHGV-0301418_48	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0301418_48	Structural annotation	PF16784	NA	NA
UHGV-0301418_49	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0301418_49	UniRef90	UniRef90_UPI00136F7FAF	NA	NA
UHGV-0301418_49	eggNOG-mapper	1158604.I591_01790	NA	NA
UHGV-0301418_49	Pfam	PF05037	NA	DUF669
UHGV-0301418_49	Structural annotation	PF05037, NF005241, COG0629	NA	NA
UHGV-0301418_50	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0301418_50	UniRef90	UniRef90_A0A2A7RC04	Nucleotide-binding protein	NA
UHGV-0301418_50	eggNOG-mapper	349123.Lreu23DRAFT_4022	AAA domain	NA
UHGV-0301418_50	Pfam	PF13479	AAA domain	AAA_24
UHGV-0301418_50	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0301418_50	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0301418_52	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0301418_52	UniRef90	UniRef90_A0A8F5EAD4	Host-nuclease inhibitor Gam family protein	NA
UHGV-0301418_52	eggNOG-mapper	1031288.AXAA01000044_gene1974	Bacteriophage Mu Gam like protein	NA
UHGV-0301418_52	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0301418_52	Structural annotation	PF07352	NA	NA
UHGV-0301418_58	PHROG	phrog_8594	NA	unknown function
UHGV-0301418_59	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0301418_59	UniRef90	UniRef90_UPI00136EBBE6	Rha family transcriptional regulator	NA
UHGV-0301418_59	eggNOG-mapper	97137.C821_00091	ORF6C domain	NA
UHGV-0301418_59	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0301418_59	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0301418_59	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0301418_59	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0301418_59	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0301418_60	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0301418_60	UniRef90	UniRef90_UPI0002F3D68F	antirepressor	NA
UHGV-0301418_60	eggNOG-mapper	1235801.C822_00110	NA	NA
UHGV-0301418_60	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0301418_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0301418_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0301418_61	UniRef90	UniRef90_A0JQI2	Phage transcriptional regulator, Cro/CI family	NA
UHGV-0301418_61	eggNOG-mapper	768486.EHR_00850	Helix-turn-helix XRE-family like proteins	NA
UHGV-0301418_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0301418_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0301418_61	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0301418_62	PHROG	phrog_87	metallo-protease	other
UHGV-0301418_62	UniRef90	UniRef90_UPI00136F3ADB	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0301418_62	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0301418_62	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0301418_62	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0301418_63	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0301418_63	UniRef90	UniRef90_UPI00189A0FE4	Ltp family lipoprotein	NA
UHGV-0301418_63	eggNOG-mapper	1408823.AXUS01000009_gene1981	Host cell surface-exposed lipoprotein	NA
UHGV-0301418_63	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0301418_63	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0301418_63	Structural annotation	PF07553, MF_01114, NF001062, COG2137	NA	NA
UHGV-0301418_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0301418_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0301418_64	UniRef90	UniRef90_UPI00136BFBC4	recombinase family protein	NA
UHGV-0301418_64	eggNOG-mapper	438780.D2KRD2_9CAUD	Recombinase	NA
UHGV-0301418_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0301418_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-0301418_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0301418_64	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0301418_65	UniRef90	UniRef90_UPI001DD2142D	monooxygenase	NA
UHGV-0301418_65	eggNOG-mapper	1423755.BAML01000036_gene1516	enzyme involved in biosynthesis of extracellular polysaccharides	NA
UHGV-0301418_65	COG	COG2329	Heme-degrading monooxygenase HmoA and related ABM domain proteins	NA
UHGV-0301418_66	UniRef90	UniRef90_A0A385XMZ7	UDG domain-containing protein	NA
UHGV-0301418_66	eggNOG-mapper	1423755.BAML01000002_gene131	Uracil-DNA glycosylase	NA
UHGV-0301418_66	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0301418_66	COG	COG1573	Uracil-DNA glycosylase	NA