UHGV-0301951

Genome information

vOTU vOTU-031902

Genome length 28,148 bps

CDS count 41

Completeness 70.14% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0301951
vOTU ID	vOTU-031902
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5947095_119_54960_round347~5217312
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.23
Jumbo phage	No

Genome content
Genome length	28,148 bps
GC content	50.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.68%
Average CDS length	645.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0301951_1	PHROG	phrog_25190	integrase	integration and excision
UHGV-0301951_1	UniRef90	UniRef90_UPI0011BAC3BC	tyrosine-type recombinase/integrase	NA
UHGV-0301951_1	eggNOG-mapper	1440052.EAKF1_ch1767	Belongs to the 'phage' integrase family	NA
UHGV-0301951_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0301951_2	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0301951_2	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0301951_2	UniRef90	UniRef90_A0A086VDR7	DNA damage-inducible protein	NA
UHGV-0301951_2	eggNOG-mapper	1147152.K7PLW4_9CAUD	DinI-like family	NA
UHGV-0301951_2	Pfam	PF06183	DinI-like family	DinI
UHGV-0301951_3	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0301951_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0301951_3	UniRef90	UniRef90_A0A641HP16	Helix-turn-helix domain-containing protein	NA
UHGV-0301951_3	eggNOG-mapper	1005994.GTGU_01759	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0301951_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0301951_3	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0301951_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0301951_3	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0301951_4	PHROG	phrog_4890	NA	unknown function
UHGV-0301951_4	UniRef90	UniRef90_A0A6C9SFL9	Phage tail protein	NA
UHGV-0301951_4	eggNOG-mapper	155864.EDL933_0287	NA	NA
UHGV-0301951_4	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0301951_5	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0301951_5	UniRef90	UniRef90_UPI0010CAF92C	tail fiber assembly protein	NA
UHGV-0301951_5	eggNOG-mapper	155864.EDL933_0286	response to oxidative stress	NA
UHGV-0301951_5	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0301951_5	Structural annotation	PF02413	NA	NA
UHGV-0301951_6	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0301951_6	UniRef90	UniRef90_UPI001786A091	tail fiber assembly protein	NA
UHGV-0301951_6	eggNOG-mapper	701347.Entcl_1128	Caudovirales tail fibre assembly protein, lambda gpK	NA
UHGV-0301951_6	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0301951_6	Structural annotation	PF02413	NA	NA
UHGV-0301951_7	PHROG	phrog_12714	NA	unknown function
UHGV-0301951_7	UniRef90	UniRef90_A0A7L5P3H7	Tail fiber protein	NA
UHGV-0301951_7	eggNOG-mapper	1147157.K7PM99_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0301951_9	PHROG	phrog_12984	lipoprotein	other
UHGV-0301951_9	UniRef90	UniRef90_UPI000BB719DD	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0301951_9	eggNOG-mapper	1540098.A0A0A0RVZ8_9CAUD	NA	NA
UHGV-0301951_10	PHROG	phrog_2589	tail protein	tail
UHGV-0301951_10	UniRef90	UniRef90_UPI001E5BF100	NA	NA
UHGV-0301951_10	eggNOG-mapper	37554.Q9MCR7_BPHK7	Putative phage tail protein	NA
UHGV-0301951_10	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0301951_10	Pfam	PF09327	NA	DUF1983
UHGV-0301951_10	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-0301951_11	PHROG	phrog_32	tail assembly protein	tail
UHGV-0301951_11	UniRef90	UniRef90_A0A330DX40	Tail assembly protein	NA
UHGV-0301951_11	eggNOG-mapper	1115515.EV102420_11_00030	Bacteriophage lambda tail assembly protein I	NA
UHGV-0301951_11	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-0301951_11	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-0301951_11	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0301951_12	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0301951_12	PHROG	phrog_30	minor tail protein	tail
UHGV-0301951_12	UniRef90	UniRef90_A0A0F1A581	Peptidase P60	NA
UHGV-0301951_12	eggNOG-mapper	1115515.EV102420_11_00040	Corresponds to locus_tag	NA
UHGV-0301951_12	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0301951_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0301951_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0301951_12	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0301951_13	PHROG	phrog_18	minor tail protein	tail
UHGV-0301951_13	UniRef90	UniRef90_A0A2H9EHC2	Phage minor tail protein L	NA
UHGV-0301951_13	eggNOG-mapper	1115515.EV102420_11_00050	Phage minor tail protein L	NA
UHGV-0301951_13	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0301951_13	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0301951_13	COG	COG4672	Phage tail protein	NA
UHGV-0301951_13	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0301951_14	PHROG	phrog_14	minor tail protein	tail
UHGV-0301951_14	UniRef90	UniRef90_A0A7H0MAW3	Phage tail protein	NA
UHGV-0301951_14	eggNOG-mapper	1115515.EV102420_11_00060	Phage minor tail protein	NA
UHGV-0301951_14	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0301951_14	COG	COG4718	Phage tail protein	NA
UHGV-0301951_14	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0301951_15	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0301951_15	UniRef90	UniRef90_UPI001A9ECB82	phage tail tape measure protein	NA
UHGV-0301951_15	eggNOG-mapper	911008.GLAD_04140	tape measure protein	NA
UHGV-0301951_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0301951_15	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0301951_15	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0301951_15	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0301951_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0301951_15	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0301951_16	eggNOG-mapper	571.MC52_15230	NA	NA
UHGV-0301951_17	PHROG	phrog_14766	tail protein	tail
UHGV-0301951_17	UniRef90	UniRef90_A0A6S5JNV0	Phage tail protein	NA
UHGV-0301951_17	eggNOG-mapper	1147157.K7PJX0_9CAUD	NA	NA
UHGV-0301951_17	Pfam	PF13227	NA	DUF4035
UHGV-0301951_17	Structural annotation	PF06223	NA	NA
UHGV-0301951_18	PHROG	phrog_14766	tail protein	tail
UHGV-0301951_18	UniRef90	UniRef90_A0A411GER6	Phage tail protein	NA
UHGV-0301951_18	eggNOG-mapper	911008.GLAD_04137	tail assembly chaperone	NA
UHGV-0301951_18	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0301951_18	Structural annotation	PF06222	NA	NA
UHGV-0301951_19	PHROG	phrog_11009	NA	unknown function
UHGV-0301951_19	UniRef90	UniRef90_K7P835	Major tail subunit	NA
UHGV-0301951_19	eggNOG-mapper	1147157.K7PHL2_9CAUD	NA	NA
UHGV-0301951_19	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0301951_19	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0301951_20	PHROG	phrog_347	tail terminator	connector
UHGV-0301951_20	UniRef90	UniRef90_UPI000939EAE1	NA	NA
UHGV-0301951_20	eggNOG-mapper	1147157.K7PM93_9CAUD	NA	NA
UHGV-0301951_20	Pfam	PF11367	NA	DUF3168
UHGV-0301951_20	Structural annotation	PF11367	NA	NA
UHGV-0301951_21	PHROG	phrog_23409	NA	unknown function
UHGV-0301951_21	UniRef90	UniRef90_A0A7H9NAT0	HK97 gp10 family phage protein	NA
UHGV-0301951_21	eggNOG-mapper	37554.Q9MCS9_BPHK7	exonuclease activity	NA
UHGV-0301951_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0301951_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0301951_21	Structural annotation	TIGR01725	NA	NA
UHGV-0301951_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0301951_22	UniRef90	UniRef90_UPI000B49D757	phage head closure protein	NA
UHGV-0301951_22	eggNOG-mapper	399742.Ent638_2233	head-tail adaptor	NA
UHGV-0301951_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0301951_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0301951_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0301951_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0301951_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0301951_23	UniRef90	UniRef90_A0A7L5NYR4	Phage gp6-like head-tail connector protein	NA
UHGV-0301951_23	eggNOG-mapper	640513.Entas_3076	Phage gp6-like head-tail connector protein	NA
UHGV-0301951_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0301951_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0301951_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0301951_24	PHROG	phrog_21989	NA	unknown function
UHGV-0301951_24	UniRef90	UniRef90_A0A2R4PH62	Phage-like protein	NA
UHGV-0301951_24	eggNOG-mapper	754331.AEME01000001_gene206	NA	NA
UHGV-0301951_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0301951_25	UniRef90	UniRef90_E6WKD7	Phage major capsid protein, HK97 family	NA
UHGV-0301951_25	eggNOG-mapper	640513.Entas_3078	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0301951_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0301951_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0301951_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0301951_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0301951_26	KOfam	K06904	NA	NA
UHGV-0301951_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0301951_26	UniRef90	UniRef90_UPI000D610935	HK97 family phage prohead protease	NA
UHGV-0301951_26	eggNOG-mapper	640513.Entas_3079	Caudovirus prohead serine protease	NA
UHGV-0301951_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0301951_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0301951_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0301951_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0301951_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0301951_27	UniRef90	UniRef90_A0A7X8P3R2	Phage portal protein	NA
UHGV-0301951_27	eggNOG-mapper	640513.Entas_3080	TIGRFAM Phage portal protein, HK97	NA
UHGV-0301951_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0301951_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0301951_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0301951_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0301951_28	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0301951_28	eggNOG-mapper	1440052.EAKF1_ch0465c	NA	NA
UHGV-0301951_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0301951_29	UniRef90	UniRef90_A0A133LFK9	Putative phage terminase, large subunit	NA
UHGV-0301951_29	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-0301951_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0301951_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0301951_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0301951_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0301951_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0301951_30	UniRef90	UniRef90_A0A2H9EHH5	Phage terminase, small subunit	NA
UHGV-0301951_30	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0301951_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0301951_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0301951_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0301951_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0301951_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0301951_31	UniRef90	UniRef90_A0A768C333	HNH endonuclease	NA
UHGV-0301951_31	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0301951_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0301951_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0301951_31	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0301951_32	eggNOG-mapper	35703.DQ02_24225	NA	NA
UHGV-0301951_32	Structural annotation	PF11730	NA	NA
UHGV-0301951_34	PHROG	phrog_5415	NA	unknown function
UHGV-0301951_35	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0301951_35	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0301951_36	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0301951_36	PHROG	phrog_181	endolysin	lysis
UHGV-0301951_36	UniRef90	UniRef90_A0A0J1LGR8	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0301951_36	eggNOG-mapper	175950.Q8HA86_9CAUD	chitinase activity	NA
UHGV-0301951_36	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0301951_36	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0301951_37	PHROG	phrog_217	holin	lysis
UHGV-0301951_37	UniRef90	UniRef90_A0A7L5P522	Phage holin family protein	NA
UHGV-0301951_37	eggNOG-mapper	1080067.BAZH01000027_gene3193	Putative 3TM holin, Phage_holin_3	NA
UHGV-0301951_37	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0301951_38	PHROG	phrog_198	holin	lysis
UHGV-0301951_38	UniRef90	UniRef90_UPI001C0F2D3E	putative holin	NA
UHGV-0301951_38	eggNOG-mapper	1080067.BAZH01000027_gene3194	Putative phage holin	NA
UHGV-0301951_38	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0301951_38	Structural annotation	PF16931	NA	NA
UHGV-0301951_39	PHROG	phrog_18859	NA	unknown function
UHGV-0301951_40	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0301951_40	UniRef90	UniRef90_A0A1L4PH93	Antitermination protein	NA
UHGV-0301951_40	eggNOG-mapper	1399774.JDWH01000016_gene3443	NA	NA
UHGV-0301951_40	Pfam	PF06576	NA	DUF1133
UHGV-0301951_40	Structural annotation	PF06576	NA	NA
UHGV-0301951_41	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0301951_41	UniRef90	UniRef90_Q1R2A8	HNHc domain-containing protein	NA
UHGV-0301951_41	eggNOG-mapper	1147152.K7PJR3_9CAUD	NA	NA
UHGV-0301951_41	Pfam	PF06147	NA	DUF968
UHGV-0301951_41	Structural annotation	PF06147	NA	NA