UHGV-0302082

Genome information

vOTU vOTU-020530

Genome length 26,655 bps

CDS count 39

Completeness 58.92% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0302082
vOTU ID	vOTU-020530
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5091592_141_74505_round347~5168718
BioSample	SAMN07795011
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	80.1
Jumbo phage	No

Genome content
Genome length	26,655 bps
GC content	51.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.90%
Average CDS length	645.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0302082_1	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0302082_1	UniRef90	UniRef90_A0A7I7FYE6	Phg_2220_C domain-containing protein	NA
UHGV-0302082_1	eggNOG-mapper	1399774.JDWH01000016_gene3451	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0302082_1	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0302082_1	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0302082_1	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0302082_2	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0302082_2	UniRef90	UniRef90_UPI000F5E7016	PerC family transcriptional regulator	NA
UHGV-0302082_2	eggNOG-mapper	1399774.JDWH01000016_gene3450	PerC transcriptional activator	NA
UHGV-0302082_2	Structural annotation	PF07106, PF06069, MF_01909, NF012168, NF033650, COG5625	NA	NA
UHGV-0302082_3	KOfam	K24174	METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]	NA
UHGV-0302082_3	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0302082_3	UniRef90	UniRef90_A0A5E1ATU5	Adenine-specific DNA methyltransferase	NA
UHGV-0302082_3	eggNOG-mapper	1399774.JDWH01000016_gene3449	Belongs to the MT-A70-like family	NA
UHGV-0302082_3	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0302082_3	Pfam	PF05063	MT-A70	MT-A70
UHGV-0302082_3	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0302082_3	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0302082_4	PHROG	phrog_303	NA	unknown function
UHGV-0302082_4	UniRef90	UniRef90_A0A377CD16	Ybl17	NA
UHGV-0302082_4	eggNOG-mapper	1399774.JDWH01000016_gene3448	NA	NA
UHGV-0302082_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0302082_5	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0302082_5	UniRef90	UniRef90_A0A6G4LAX9	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0302082_5	eggNOG-mapper	1147158.K7PKN5_9CAUD	magnesium ion binding	NA
UHGV-0302082_5	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0302082_5	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0302082_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0302082_6	UniRef90	UniRef90_A0A0J1LFM5	ANT domain-containing protein	NA
UHGV-0302082_6	eggNOG-mapper	1399774.JDWH01000016_gene3445	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0302082_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0302082_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0302082_6	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0302082_6	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0302082_7	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0302082_7	UniRef90	UniRef90_K7PJS6	HNHc domain-containing protein	NA
UHGV-0302082_7	eggNOG-mapper	1147158.K7PJS6_9CAUD	NA	NA
UHGV-0302082_7	Pfam	PF06147	NA	DUF968
UHGV-0302082_7	Structural annotation	PF06147	NA	NA
UHGV-0302082_8	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0302082_8	UniRef90	UniRef90_A0A1L4PH93	Antitermination protein	NA
UHGV-0302082_8	eggNOG-mapper	1399774.JDWH01000016_gene3443	NA	NA
UHGV-0302082_8	Pfam	PF06576	NA	DUF1133
UHGV-0302082_8	Structural annotation	PF06576	NA	NA
UHGV-0302082_9	PHROG	phrog_198	holin	lysis
UHGV-0302082_9	UniRef90	UniRef90_UPI000649E73C	phage holin family protein	NA
UHGV-0302082_9	eggNOG-mapper	716541.ECL_01677	Putative phage holin	NA
UHGV-0302082_9	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0302082_9	Structural annotation	PF16931	NA	NA
UHGV-0302082_10	PHROG	phrog_217	holin	lysis
UHGV-0302082_10	UniRef90	UniRef90_A0A0H3CIV2	Putative prophage membrane protein	NA
UHGV-0302082_10	eggNOG-mapper	906669.G8C7V9_9CAUD	Pfam:Phage_holin_3_7	NA
UHGV-0302082_10	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0302082_11	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0302082_11	PHROG	phrog_12853	NA	unknown function
UHGV-0302082_11	UniRef90	UniRef90_A0A0V9JGI2	PG_binding_3 domain-containing protein	NA
UHGV-0302082_11	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-0302082_11	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0302082_11	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0302082_11	COG	COG3926	Lysozyme family protein	NA
UHGV-0302082_11	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0302082_12	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0302082_12	UniRef90	UniRef90_UPI001C5AC0A9	NA	NA
UHGV-0302082_12	eggNOG-mapper	1399774.JDWH01000016_gene3439	NA	NA
UHGV-0302082_13	PHROG	phrog_6978	NA	unknown function
UHGV-0302082_13	eggNOG-mapper	1006000.GKAS_04450	NA	NA
UHGV-0302082_13	Structural annotation	PF12857	NA	NA
UHGV-0302082_14	eggNOG-mapper	944547.ABLL_1891	NA	NA
UHGV-0302082_14	Structural annotation	PF20251, MF_00791, NF003967, COG2967	NA	NA
UHGV-0302082_15	PHROG	phrog_16910	NA	unknown function
UHGV-0302082_15	UniRef90	UniRef90_A0A5X6PAL3	Fur-regulated protein (Fragment)	NA
UHGV-0302082_15	eggNOG-mapper	10713.M9NZE9_BPPH8	NA	NA
UHGV-0302082_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0302082_16	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0302082_16	UniRef90	UniRef90_UPI0015F79BDB	HNH endonuclease	NA
UHGV-0302082_16	eggNOG-mapper	754331.AEME01000001_gene4282	Endonuclease	NA
UHGV-0302082_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0302082_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0302082_16	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0302082_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0302082_17	UniRef90	UniRef90_A0A0P8HY14	Terminase	NA
UHGV-0302082_17	eggNOG-mapper	640513.Entas_3083	TIGRFAM phage terminase, small subunit	NA
UHGV-0302082_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0302082_17	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0302082_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0302082_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0302082_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0302082_18	UniRef90	UniRef90_A0A076LNR4	Putative phage terminase, large subunit	NA
UHGV-0302082_18	eggNOG-mapper	667121.ET1_08_01050	terminase	NA
UHGV-0302082_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0302082_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0302082_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0302082_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0302082_19	PHROG	phrog_7105	NA	unknown function
UHGV-0302082_19	UniRef90	UniRef90_A0A163XUY0	Membrane protein	NA
UHGV-0302082_19	eggNOG-mapper	1332071.L581_3145	NA	NA
UHGV-0302082_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0302082_20	UniRef90	UniRef90_A4WC38	Phage portal protein, HK97 family	NA
UHGV-0302082_20	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0302082_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0302082_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0302082_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0302082_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0302082_21	KOfam	K06904	NA	NA
UHGV-0302082_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0302082_21	UniRef90	UniRef90_A0A156GG68	HK97 family phage prohead protease	NA
UHGV-0302082_21	eggNOG-mapper	399742.Ent638_2599	PFAM Peptidase U35, phage prohead HK97	NA
UHGV-0302082_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0302082_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0302082_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0302082_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0302082_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0302082_22	UniRef90	UniRef90_A0A345C9L3	Phage major capsid protein	NA
UHGV-0302082_22	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0302082_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0302082_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0302082_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0302082_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0302082_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0302082_23	UniRef90	UniRef90_UPI0005F8C695	head-tail connector protein	NA
UHGV-0302082_23	eggNOG-mapper	399742.Ent638_2597	Phage gp6-like head-tail connector protein	NA
UHGV-0302082_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0302082_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0302082_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0302082_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0302082_24	UniRef90	UniRef90_A0A156GG21	Phage head-tail adaptor	NA
UHGV-0302082_24	eggNOG-mapper	399742.Ent638_2596	Phage head-tail joining protein	NA
UHGV-0302082_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0302082_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0302082_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0302082_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0302082_25	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0302082_25	UniRef90	UniRef90_A0A0U3TGK9	NA	NA
UHGV-0302082_25	eggNOG-mapper	754331.AEME01000001_gene209	NA	NA
UHGV-0302082_25	Structural annotation	TIGR01725	NA	NA
UHGV-0302082_26	PHROG	phrog_209	portal protein	head and packaging
UHGV-0302082_26	UniRef90	UniRef90_A0A156GFE4	Bacteriophage protein	NA
UHGV-0302082_26	eggNOG-mapper	399742.Ent638_2594	NA	NA
UHGV-0302082_26	Structural annotation	PF09646	NA	NA
UHGV-0302082_27	PHROG	phrog_208	NA	unknown function
UHGV-0302082_27	UniRef90	UniRef90_UPI000E2F881D	NA	NA
UHGV-0302082_27	eggNOG-mapper	399742.Ent638_2593	NA	NA
UHGV-0302082_27	Pfam	PF10948	NA	DUF2635
UHGV-0302082_27	Structural annotation	PF10948	NA	NA
UHGV-0302082_28	PHROG	phrog_165	tail sheath	tail
UHGV-0302082_28	UniRef90	UniRef90_A4WC30	Bacteriophage Mu tail sheath family protein	NA
UHGV-0302082_28	eggNOG-mapper	399742.Ent638_2592	Tail sheath protein	NA
UHGV-0302082_28	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0302082_28	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0302082_28	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0302082_28	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0302082_29	PHROG	phrog_185	tail tube protein	tail
UHGV-0302082_29	UniRef90	UniRef90_UPI0012BB4721	phage tail tube protein	NA
UHGV-0302082_29	eggNOG-mapper	399742.Ent638_2591	phage tail	NA
UHGV-0302082_29	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0302082_29	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0302082_30	PHROG	phrog_166	tail protein	tail
UHGV-0302082_30	UniRef90	UniRef90_A0A156GFS5	Bacteriophage protein	NA
UHGV-0302082_30	eggNOG-mapper	399742.Ent638_2590	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0302082_30	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0302082_30	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0302082_31	PHROG	phrog_26612	NA	unknown function
UHGV-0302082_31	UniRef90	UniRef90_A4WC27	Phage tail tape measure protein, TP901 family	NA
UHGV-0302082_31	eggNOG-mapper	399742.Ent638_2589	NA	NA
UHGV-0302082_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0302082_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0302082_31	COG	COG5283	Phage-related tail protein	NA
UHGV-0302082_31	Structural annotation	TIGR01760	NA	NA
UHGV-0302082_32	PHROG	phrog_5485	NA	unknown function
UHGV-0302082_32	eggNOG-mapper	667121.ET1_08_01180	NA	NA
UHGV-0302082_33	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0302082_33	UniRef90	UniRef90_A0A8B3UU96	DNA circulation family protein	NA
UHGV-0302082_33	eggNOG-mapper	399742.Ent638_2588	DNA circulation protein	NA
UHGV-0302082_33	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0302082_33	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0302082_33	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0302082_34	PHROG	phrog_177	tail protein	tail
UHGV-0302082_34	UniRef90	UniRef90_A0A156GG55	Bacteriophage Mu P family protein	NA
UHGV-0302082_34	eggNOG-mapper	399742.Ent638_2587	tail protein	NA
UHGV-0302082_34	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0302082_34	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0302082_34	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0302082_35	PHROG	phrog_28548	NA	unknown function
UHGV-0302082_35	UniRef90	UniRef90_A0A156GEZ8	Phage baseplate assembly protein V	NA
UHGV-0302082_35	eggNOG-mapper	399742.Ent638_2586	assembly, protein	NA
UHGV-0302082_35	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0302082_35	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0302082_35	COG	COG4384	NA	NA
UHGV-0302082_35	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0302082_36	PHROG	phrog_180	tail protein	tail
UHGV-0302082_36	UniRef90	UniRef90_A0A156GFZ7	Phage GP46 family protein	NA
UHGV-0302082_36	eggNOG-mapper	399742.Ent638_2585	phage GP46	NA
UHGV-0302082_36	Pfam	PF07409	NA	GP46
UHGV-0302082_36	COG	COG4381	NA	NA
UHGV-0302082_36	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0302082_37	PHROG	phrog_2103	baseplate protein	tail
UHGV-0302082_37	UniRef90	UniRef90_A0A156GEU2	Baseplate J family protein	NA
UHGV-0302082_37	eggNOG-mapper	399742.Ent638_2584	of phage Mu protein gp47	NA
UHGV-0302082_37	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0302082_37	COG	COG3299	NA	NA
UHGV-0302082_37	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0302082_38	PHROG	phrog_203	tail protein	tail
UHGV-0302082_38	UniRef90	UniRef90_UPI001F1A8D27	YmfQ family protein	NA
UHGV-0302082_38	eggNOG-mapper	399742.Ent638_2583	NA	NA
UHGV-0302082_38	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0302082_38	COG	COG3778	NA	NA
UHGV-0302082_38	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0302082_39	PHROG	phrog_18834	NA	unknown function
UHGV-0302082_39	UniRef90	UniRef90_A0A383G041	Tail fiber protein	NA
UHGV-0302082_39	eggNOG-mapper	399742.Ent638_2582	NA	NA