UHGV-0303001

Genome information

vOTU vOTU-031911

Genome length 24,174 bps

CDS count 29

Completeness 61.20% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0303001
vOTU ID	vOTU-031911
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR3277218_141_14140_round8-12~812089
BioSample	SAMN07247528
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.48
Jumbo phage	No

Genome content
Genome length	24,174 bps
GC content	30.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	90.01%
Average CDS length	751.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0303001_1	KOfam	K14059	int; integrase	NA
UHGV-0303001_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0303001_1	UniRef90	UniRef90_UPI001AA3283B	site-specific integrase	NA
UHGV-0303001_1	eggNOG-mapper	641107.CDLVIII_0246	Belongs to the 'phage' integrase family	NA
UHGV-0303001_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0303001_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0303001_1	Structural annotation	PF00589, MF_02055, TIGR02249, COG0582	NA	NA
UHGV-0303001_2	eggNOG-mapper	641107.CDLVIII_1452	NA	NA
UHGV-0303001_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0303001_3	PHROG	phrog_435	endolysin	lysis
UHGV-0303001_3	UniRef90	UniRef90_UPI0006C0CFD4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0303001_3	eggNOG-mapper	1280689.AUJC01000011_gene1538	Cell wall hydrolase autolysin	NA
UHGV-0303001_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0303001_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0303001_3	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0303001_4	PHROG	phrog_199	holin	lysis
UHGV-0303001_4	UniRef90	UniRef90_A0A174D4Y4	Toxin secretion/phage lysis holin	NA
UHGV-0303001_4	eggNOG-mapper	1280689.AUJC01000003_gene982	Bacteriophage holin family	NA
UHGV-0303001_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0303001_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0303001_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0303001_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0303001_5	PHROG	phrog_18444	NA	unknown function
UHGV-0303001_5	UniRef90	UniRef90_UPI0011788049	peptide chain release factor 2	NA
UHGV-0303001_5	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0303001_6	PHROG	phrog_11785	minor head protein	head and packaging
UHGV-0303001_6	UniRef90	UniRef90_U2NPC0	KID repeat-containing protein	NA
UHGV-0303001_6	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0303001_6	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0303001_6	COG	COG4926	Phage-related protein	NA
UHGV-0303001_6	Structural annotation	PF14594, PF21471, NF033848, NF012201, COG3500	NA	NA
UHGV-0303001_7	PHROG	phrog_1401	NA	unknown function
UHGV-0303001_7	UniRef90	UniRef90_UPI0018ABCBD1	NA	NA
UHGV-0303001_7	eggNOG-mapper	1499683.CCFF01000014_gene3897	NA	NA
UHGV-0303001_7	Structural annotation	PF07761	NA	NA
UHGV-0303001_8	PHROG	phrog_1194	NA	unknown function
UHGV-0303001_8	UniRef90	UniRef90_A0A0R1VMM5	NA	NA
UHGV-0303001_8	eggNOG-mapper	1280692.AUJL01000025_gene2069	NA	NA
UHGV-0303001_8	Pfam	PF20458	NA	DUF6711
UHGV-0303001_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0303001_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0303001_9	UniRef90	UniRef90_A0A1I2KTM2	Phage-related protein	NA
UHGV-0303001_9	eggNOG-mapper	1321778.HMPREF1982_02681	SLT domain	NA
UHGV-0303001_9	COG	COG1511	NA	NA
UHGV-0303001_10	PHROG	phrog_8355	NA	unknown function
UHGV-0303001_10	UniRef90	UniRef90_UPI000665A2C9	Gp15 family bacteriophage protein	NA
UHGV-0303001_10	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0303001_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0303001_10	Structural annotation	PF06854	NA	NA
UHGV-0303001_11	PHROG	phrog_8300	NA	unknown function
UHGV-0303001_11	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-0303001_11	Structural annotation	PF06896	NA	NA
UHGV-0303001_12	PHROG	phrog_820	major tail protein	tail
UHGV-0303001_12	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0303001_12	COG	COG5492	NA	NA
UHGV-0303001_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0303001_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0303001_13	UniRef90	UniRef90_UPI000C08D995	minor capsid protein	NA
UHGV-0303001_13	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0303001_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0303001_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0303001_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0303001_14	UniRef90	UniRef90_UPI000C085B44	minor capsid protein	NA
UHGV-0303001_14	eggNOG-mapper	1280692.AUJL01000027_gene2156	Minor capsid protein	NA
UHGV-0303001_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0303001_15	PHROG	phrog_8710	NA	unknown function
UHGV-0303001_15	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0303001_15	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0303001_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0303001_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0303001_16	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0303001_17	PHROG	phrog_1378	NA	unknown function
UHGV-0303001_17	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0303001_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0303001_18	UniRef90	UniRef90_UPI000C06A988	capsid protein	NA
UHGV-0303001_18	eggNOG-mapper	1280692.AUJL01000027_gene2160	NA	NA
UHGV-0303001_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0303001_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0303001_19	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0303001_19	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0303001_19	Structural annotation	PF10788	NA	NA
UHGV-0303001_20	PHROG	phrog_918	NA	unknown function
UHGV-0303001_20	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0303001_20	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0303001_20	Pfam	PF19791	NA	DUF6275
UHGV-0303001_20	Structural annotation	PF19791	NA	NA
UHGV-0303001_21	PHROG	phrog_872	NA	unknown function
UHGV-0303001_21	UniRef90	UniRef90_A0A350S1T8	NA	NA
UHGV-0303001_21	eggNOG-mapper	1280692.AUJL01000027_gene2162	NA	NA
UHGV-0303001_21	Pfam	PF11195	NA	DUF2829
UHGV-0303001_21	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0303001_23	PHROG	phrog_1865	NA	unknown function
UHGV-0303001_23	Structural annotation	PF07073, MF_01077, NF037951, COG4568	NA	NA
UHGV-0303001_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0303001_24	UniRef90	UniRef90_UPI001896AD6F	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0303001_24	eggNOG-mapper	1391647.AVSV01000003_gene1804	Phage minor capsid protein 2	NA
UHGV-0303001_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0303001_24	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0303001_24	COG	COG2369	NA	NA
UHGV-0303001_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0303001_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0303001_25	UniRef90	UniRef90_UPI001898ADC2	capsid protein	NA
UHGV-0303001_25	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0303001_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0303001_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0303001_26	PHROG	phrog_10250	NA	unknown function
UHGV-0303001_26	UniRef90	UniRef90_UPI001898DC74	terminase family protein	NA
UHGV-0303001_26	eggNOG-mapper	1280692.AUJL01000027_gene2166	Phage terminase, large subunit, PBSX family	NA
UHGV-0303001_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0303001_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0303001_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0303001_27	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0303001_27	UniRef90	UniRef90_A0A6L9EPW1	HNHc domain-containing protein	NA
UHGV-0303001_27	eggNOG-mapper	881953.E0YIS7_9CAUD	HNH endonuclease	NA
UHGV-0303001_27	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0303001_27	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0303001_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0303001_27	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0303001_27	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0303001_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0303001_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0303001_28	UniRef90	UniRef90_UPI0011CAB70D	terminase small subunit	NA
UHGV-0303001_28	eggNOG-mapper	1294142.CINTURNW_1022	Terminase Small Subunit	NA
UHGV-0303001_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0303001_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0303001_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0303001_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0303001_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0303001_29	UniRef90	UniRef90_A0A1M6EYK1	Cytosine-specific methyltransferase	NA
UHGV-0303001_29	eggNOG-mapper	1391647.AVSV01000003_gene1798	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0303001_29	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0303001_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0303001_29	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0303001_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0303001_29	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA