UHGV-0303077

Genome information

Genome length 30,294 bps

CDS count 42

Completeness 100.00% (complete)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0303077
vOTU ID	vOTU-005195
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR3993000_141_19641_round8-12~825063
BioSample	NA
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.54
Jumbo phage	No

Genome content
Genome length	30,294 bps
GC content	58.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.33%
Average CDS length	662.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0303077_1	PHROG	phrog_372	tail protein	tail
UHGV-0303077_1	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-0303077_1	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0303077_1	Pfam	PF05895	NA	DUF859
UHGV-0303077_1	COG	COG4675	Phage tail collar domain	NA
UHGV-0303077_2	Pfam	PF11192	NA	DUF2977
UHGV-0303077_3	PHROG	phrog_1863	NA	unknown function
UHGV-0303077_3	eggNOG-mapper	1291050.JAGE01000001_gene2942	NA	NA
UHGV-0303077_4	PHROG	phrog_443	holin	lysis
UHGV-0303077_4	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0303077_4	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0303077_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0303077_4	Structural annotation	PF16945	NA	NA
UHGV-0303077_5	PHROG	phrog_21357	endolysin	lysis
UHGV-0303077_5	UniRef90	UniRef90_A0A6N7WM72	CHAP domain-containing protein	NA
UHGV-0303077_5	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0303077_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0303077_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0303077_5	COG	COG1388	LysM repeat	NA
UHGV-0303077_5	Structural annotation	PF01471, PF10030, TIGR02594, NF038080, COG3409, COG3942	NA	NA
UHGV-0303077_6	KOfam	K14059	int; integrase	NA
UHGV-0303077_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0303077_6	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0303077_6	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0303077_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0303077_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0303077_6	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0303077_7	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0303077_7	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0303077_7	UniRef90	UniRef90_UPI0019616193	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0303077_7	eggNOG-mapper	1235792.C808_03055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0303077_7	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0303077_7	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0303077_7	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0303077_8	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0303077_8	UniRef90	UniRef90_UPI00195F70B6	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0303077_8	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0303077_8	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0303077_8	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0303077_8	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0303077_9	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0303077_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0303077_9	UniRef90	UniRef90_UPI000E52777C	helix-turn-helix domain-containing protein	NA
UHGV-0303077_9	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0303077_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0303077_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0303077_11	UniRef90	UniRef90_A0A3A6JSY4	XRE family transcriptional regulator	NA
UHGV-0303077_11	eggNOG-mapper	1123314.AUIO01000016_gene812	sequence-specific DNA binding	NA
UHGV-0303077_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0303077_11	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0303077_14	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0303077_14	UniRef90	UniRef90_A0A2K4ZMH5	HTH cro/C1-type domain-containing protein	NA
UHGV-0303077_14	eggNOG-mapper	1121342.AUCO01000012_gene1734	sequence-specific DNA binding	NA
UHGV-0303077_14	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0303077_14	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0303077_16	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0303077_16	UniRef90	UniRef90_UPI00195619BC	helix-turn-helix domain-containing protein	NA
UHGV-0303077_16	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0303077_16	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0303077_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0303077_16	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0303077_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0303077_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0303077_17	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0303077_17	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0303077_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0303077_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0303077_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0303077_17	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0303077_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0303077_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0303077_18	UniRef90	UniRef90_UPI000F6363C1	ParA family protein	NA
UHGV-0303077_18	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0303077_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0303077_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0303077_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0303077_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0303077_19	PHROG	phrog_27290	NA	unknown function
UHGV-0303077_19	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0303077_19	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0303077_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0303077_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0303077_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0303077_21	PHROG	phrog_38832	NA	unknown function
UHGV-0303077_21	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0303077_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0303077_23	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0303077_23	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0303077_24	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0303077_24	eggNOG-mapper	397291.C804_05332	Cysteine-rich KTR	NA
UHGV-0303077_24	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0303077_24	Structural annotation	PF14205	NA	NA
UHGV-0303077_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0303077_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0303077_25	UniRef90	UniRef90_UPI001C3BDB2A	HNH endonuclease	NA
UHGV-0303077_25	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0303077_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0303077_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0303077_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0303077_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0303077_26	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-0303077_26	eggNOG-mapper	1234664.AMRO01000024_gene1803	Phage terminase, small subunit	NA
UHGV-0303077_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0303077_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0303077_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0303077_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0303077_27	UniRef90	UniRef90_A0A6N3FX18	Phage Terminase	NA
UHGV-0303077_27	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0303077_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0303077_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0303077_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0303077_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0303077_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0303077_29	UniRef90	UniRef90_A0A1Y3SK49	Phage portal protein	NA
UHGV-0303077_29	eggNOG-mapper	663278.Ethha_1836	Phage portal protein, HK97 family	NA
UHGV-0303077_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0303077_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0303077_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0303077_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0303077_30	PHROG	phrog_16951	NA	unknown function
UHGV-0303077_30	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0303077_30	eggNOG-mapper	1235797.C816_01541	NA	NA
UHGV-0303077_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0303077_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0303077_31	UniRef90	UniRef90_A0A7X5KT24	Phage major capsid protein	NA
UHGV-0303077_31	eggNOG-mapper	742738.HMPREF9460_04071	phage major capsid protein, HK97 family	NA
UHGV-0303077_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0303077_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0303077_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0303077_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0303077_33	eggNOG-mapper	1329516.JPST01000017_gene425	Phage gp6-like head-tail connector protein	NA
UHGV-0303077_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0303077_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0303077_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0303077_34	UniRef90	UniRef90_A0A1I2DTU2	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0303077_34	eggNOG-mapper	1235793.C809_04325	Phage head-tail joining protein	NA
UHGV-0303077_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0303077_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0303077_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0303077_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0303077_35	UniRef90	UniRef90_A0A1I2DTS6	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0303077_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0303077_36	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0303077_36	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0303077_36	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0303077_38	eggNOG-mapper	588581.Cpap_1265	NA	NA
UHGV-0303077_39	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0303077_39	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0303077_39	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0303077_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0303077_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0303077_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0303077_40	UniRef90	UniRef90_UPI0016288C5C	phage tail family protein	NA
UHGV-0303077_40	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0303077_40	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0303077_41	PHROG	phrog_3558	tail protein	tail
UHGV-0303077_41	UniRef90	UniRef90_A0A2V2GKI2	Prophage_tail domain-containing protein	NA
UHGV-0303077_41	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0303077_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0303077_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0303077_41	COG	COG4926	Phage-related protein	NA
UHGV-0303077_41	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA