UHGV-0303661

Genome information

vOTU vOTU-031917

Genome length 26,729 bps

CDS count 39

Completeness 66.58% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0303661
vOTU ID	vOTU-031917
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1190777_119_30093_round8-12~822612
BioSample	SAMN13288291
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.42
Jumbo phage	No

Genome content
Genome length	26,729 bps
GC content	45.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.63%
Average CDS length	639.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0303661_4	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0303661_4	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0303661_5	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0303661_5	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0303661_5	UniRef90	UniRef90_A0A1G5VHZ6	DNA-binding protein HU-beta	NA
UHGV-0303661_5	eggNOG-mapper	888062.HMPREF9083_1165	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0303661_5	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0303661_5	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0303661_6	PHROG	phrog_31099	NA	unknown function
UHGV-0303661_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0303661_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0303661_8	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0303661_8	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0303661_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0303661_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0303661_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0303661_12	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0303661_12	Structural annotation	PF07374, TIGR02984, COG2739	NA	NA
UHGV-0303661_14	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0303661_14	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0303661_14	UniRef90	UniRef90_R7PRY1	Phage terminase small subunit	NA
UHGV-0303661_14	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0303661_14	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0303661_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0303661_14	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0303661_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0303661_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0303661_15	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-0303661_15	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0303661_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0303661_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0303661_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0303661_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0303661_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0303661_16	PHROG	phrog_145	portal protein	head and packaging
UHGV-0303661_16	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0303661_16	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0303661_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0303661_17	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0303661_17	UniRef90	UniRef90_UPI00041DDA5E	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0303661_17	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0303661_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0303661_19	PHROG	phrog_3150	NA	unknown function
UHGV-0303661_19	eggNOG-mapper	580331.Thit_1411	NA	NA
UHGV-0303661_20	eggNOG-mapper	1232428.CAVO010000021_gene804	NA	NA
UHGV-0303661_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-0303661_21	UniRef90	UniRef90_A0A316LMU4	P22 coat protein-protein 5 domain protein	NA
UHGV-0303661_21	eggNOG-mapper	1111454.HMPREF1250_1047	P22 coat protein-protein 5 domain protein	NA
UHGV-0303661_21	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0303661_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0303661_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0303661_22	UniRef90	UniRef90_M5AAE1	Tail protein	NA
UHGV-0303661_22	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-0303661_22	COG	COG5005	NA	NA
UHGV-0303661_22	Structural annotation	TIGR01725	NA	NA
UHGV-0303661_23	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0303661_24	eggNOG-mapper	1111454.HMPREF1250_1050	NA	NA
UHGV-0303661_24	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0303661_25	PHROG	phrog_1407	major tail protein	tail
UHGV-0303661_25	UniRef90	UniRef90_A0A316LTL2	Phage major tail protein, TP901-1 family	NA
UHGV-0303661_25	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-0303661_25	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0303661_25	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0303661_25	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0303661_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0303661_26	Pfam	PF11836	Phage tail tube protein, GTA-gp10	Phage_TAC_11
UHGV-0303661_26	Structural annotation	PF11836	NA	NA
UHGV-0303661_27	eggNOG-mapper	568816.Acin_1229	NA	NA
UHGV-0303661_28	PHROG	phrog_12798	NA	unknown function
UHGV-0303661_28	UniRef90	UniRef90_A0A316M5J5	TMP_3 domain-containing protein	NA
UHGV-0303661_28	eggNOG-mapper	1000569.HMPREF1040_0188	tape measure	NA
UHGV-0303661_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0303661_28	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0303661_28	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0303661_28	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-0303661_29	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0303661_29	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0303661_29	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0303661_29	Pfam	PF09343	NA	DUF2460
UHGV-0303661_29	COG	COG5448	NA	NA
UHGV-0303661_29	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0303661_30	PHROG	phrog_778	tail assembly protein	tail
UHGV-0303661_30	UniRef90	UniRef90_R7PMK6	NA	NA
UHGV-0303661_30	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0303661_30	Pfam	PF09931	NA	DUF2163
UHGV-0303661_30	COG	COG5449	NA	NA
UHGV-0303661_30	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0303661_31	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0303661_31	PHROG	phrog_329	minor tail protein	tail
UHGV-0303661_31	UniRef90	UniRef90_UPI00094E809D	NlpC/P60 family protein	NA
UHGV-0303661_31	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0303661_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0303661_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0303661_31	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0303661_32	PHROG	phrog_1101	tail protein	tail
UHGV-0303661_32	UniRef90	UniRef90_UPI0008D8FFB1	phage tail protein	NA
UHGV-0303661_32	eggNOG-mapper	1232428.CAVO010000021_gene792	Putative phage tail protein	NA
UHGV-0303661_32	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0303661_32	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA
UHGV-0303661_32	Structural annotation	PF13550, PF02010, MF_04116, NF040662, NF040520, COG4733	NA	NA
UHGV-0303661_33	PHROG	phrog_2427	NA	unknown function
UHGV-0303661_33	eggNOG-mapper	910314.HMPREF9220_1082	NA	NA
UHGV-0303661_34	PHROG	phrog_6061	NA	unknown function
UHGV-0303661_34	Structural annotation	PF20051	NA	NA
UHGV-0303661_35	PHROG	phrog_2631	tail fiber protein	tail
UHGV-0303661_35	UniRef90	UniRef90_UPI0015620027	phage tail protein	NA
UHGV-0303661_35	eggNOG-mapper	1232428.CAVO010000021_gene791	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0303661_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0303661_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0303661_38	PHROG	phrog_291	endolysin	lysis
UHGV-0303661_38	UniRef90	UniRef90_A0A1G5VJ44	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0303661_38	eggNOG-mapper	1273103.NM10_03031	Glycosyl hydrolases family 25	NA
UHGV-0303661_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0303661_38	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0303661_38	Structural annotation	PF01183, NF008377, COG3757	NA	NA