UHGV-0303820

Genome information

Genome length 36,390 bps

CDS count 57

Completeness 57.30% (medium-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0303820
vOTU ID	vOTU-030864
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR10479829_141_18688_round347~410391
BioSample	SAMN09605426
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.08
Jumbo phage	No

Genome content
Genome length	36,390 bps
GC content	38.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.05%
Average CDS length	597.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0303820_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0303820_2	UniRef90	UniRef90_A0A1C6E329	Phage-related protein	NA
UHGV-0303820_2	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0303820_2	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0303820_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0303820_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0303820_2	COG	COG4926	Phage-related protein	NA
UHGV-0303820_2	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0303820_3	eggNOG-mapper	1033744.CAEL01000015_gene50	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0303820_3	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0303820_4	Structural annotation	TIGR03808	NA	NA
UHGV-0303820_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0303820_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0303820_7	PHROG	phrog_937	hemolysin	other
UHGV-0303820_8	PHROG	phrog_443	holin	lysis
UHGV-0303820_8	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0303820_8	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0303820_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0303820_8	Structural annotation	PF16945	NA	NA
UHGV-0303820_9	PHROG	phrog_774	NA	unknown function
UHGV-0303820_9	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0303820_10	PHROG	phrog_918	NA	unknown function
UHGV-0303820_10	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0303820_10	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0303820_10	Pfam	PF19791	NA	DUF6275
UHGV-0303820_10	Structural annotation	PF19791	NA	NA
UHGV-0303820_11	PHROG	phrog_9589	endolysin	lysis
UHGV-0303820_11	UniRef90	UniRef90_R6MJZ4	Peptidase C51 domain-containing protein	NA
UHGV-0303820_11	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0303820_11	Pfam	PF05257	CHAP domain	CHAP
UHGV-0303820_11	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0303820_11	Structural annotation	PF00877, TIGR02594	NA	NA
UHGV-0303820_12	UniRef90	UniRef90_A0A1C6FU84	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0303820_12	eggNOG-mapper	1033802.SSPSH_001482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0303820_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0303820_12	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0303820_12	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0303820_14	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0303820_14	PHROG	phrog_95	integrase	integration and excision
UHGV-0303820_14	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-0303820_14	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-0303820_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0303820_14	Pfam	PF07508	Recombinase	Recombinase
UHGV-0303820_14	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0303820_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0303820_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0303820_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0303820_15	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0303820_15	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0303820_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0303820_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0303820_16	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0303820_16	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0303820_16	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0303820_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0303820_16	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0303820_18	PHROG	phrog_21028	NA	unknown function
UHGV-0303820_21	Structural annotation	PF13601, NF041230, COG1846	NA	NA
UHGV-0303820_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0303820_26	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0303820_26	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0303820_26	Structural annotation	PF01446	NA	NA
UHGV-0303820_28	KOfam	K03700	recU; recombination protein U	NA
UHGV-0303820_28	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0303820_28	UniRef90	UniRef90_V9HRS2	Holliday junction resolvase RecU	NA
UHGV-0303820_28	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0303820_28	Pfam	PF03838	Recombination protein U	RecU
UHGV-0303820_28	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0303820_33	Structural annotation	PF13384, COG2771	NA	NA
UHGV-0303820_36	PHROG	phrog_4292	NA	unknown function
UHGV-0303820_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0303820_37	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0303820_37	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0303820_37	Pfam	PF07374	NA	DUF1492
UHGV-0303820_38	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0303820_38	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0303820_38	UniRef90	UniRef90_A0A416D4J0	N6_Mtase domain-containing protein	NA
UHGV-0303820_38	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0303820_38	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0303820_38	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0303820_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0303820_38	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0303820_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0303820_39	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0303820_39	UniRef90	UniRef90_UPI00148DCDDC	terminase small subunit	NA
UHGV-0303820_39	eggNOG-mapper	764561.D7RWC4_9CAUD	Terminase small subunit	NA
UHGV-0303820_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0303820_39	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0303820_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0303820_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0303820_40	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-0303820_40	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0303820_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0303820_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0303820_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0303820_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0303820_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0303820_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0303820_41	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-0303820_41	eggNOG-mapper	764562.D7RWI5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0303820_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0303820_41	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0303820_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0303820_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0303820_42	UniRef90	UniRef90_R6M8W5	Phage protein HK97 gp10 family	NA
UHGV-0303820_42	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0303820_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0303820_42	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0303820_42	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0303820_43	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0303820_43	UniRef90	UniRef90_A0A7V7UC92	Phage head morphogenesis protein	NA
UHGV-0303820_43	eggNOG-mapper	768710.DesyoDRAFT_5222	PFAM Phage Mu protein F like protein	NA
UHGV-0303820_43	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0303820_43	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0303820_43	COG	COG2369	NA	NA
UHGV-0303820_43	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0303820_45	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-0303820_45	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-0303820_45	UniRef90	UniRef90_UPI0008323072	HD domain-containing protein	NA
UHGV-0303820_45	eggNOG-mapper	864570.HMPREF9189_0483	COG0317 Guanosine polyphosphate pyrophosphohydrolases synthetases	NA
UHGV-0303820_45	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-0303820_45	Structural annotation	PF13328	NA	NA
UHGV-0303820_47	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0303820_47	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-0303820_47	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0303820_47	Pfam	PF14265	NA	DUF4355
UHGV-0303820_47	Structural annotation	PF14265	NA	NA
UHGV-0303820_48	PHROG	phrog_422	major head protein	head and packaging
UHGV-0303820_48	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0303820_48	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-0303820_48	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0303820_50	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0303820_50	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0303820_50	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0303820_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0303820_50	Structural annotation	PF05135	NA	NA
UHGV-0303820_52	PHROG	phrog_78	tail terminator	connector
UHGV-0303820_52	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-0303820_52	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0303820_53	PHROG	phrog_88	major tail protein	tail
UHGV-0303820_53	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-0303820_53	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0303820_53	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0303820_53	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0303820_56	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0303820_56	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0303820_56	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0303820_56	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0303820_56	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0303820_56	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0303820_56	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0303820_56	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0303820_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0303820_57	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-0303820_57	eggNOG-mapper	1262449.CP6013_1050	PFAM Phage tail protein	NA
UHGV-0303820_57	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0303820_57	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0303820_57	COG	COG4722	Phage-related protein YomH	NA