UHGV-0305765

Genome information

vOTU vOTU-031928

Genome length 55,045 bps

CDS count 99

Completeness 68.30% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0305765
vOTU ID	vOTU-031928
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8133847_141_10286_round1256~4487070
BioSample	SAMN10342709
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.75
Jumbo phage	No

Genome content
Genome length	55,045 bps
GC content	37.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	86.87%
Average CDS length	487.42 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0305765_3	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0305765_3	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0305765_4	PHROG	phrog_1129	holin	lysis
UHGV-0305765_4	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0305765_4	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0305765_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0305765_4	Structural annotation	PF16079	NA	NA
UHGV-0305765_5	Structural annotation	PF05657	NA	NA
UHGV-0305765_6	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0305765_6	AcrCatalog	cluster_24841	NA	NA
UHGV-0305765_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0305765_8	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0305765_10	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0305765_11	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0305765_11	UniRef90	UniRef90_A0A2Z4QA49	AP2 protein	NA
UHGV-0305765_11	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0305765_11	Structural annotation	PF17375	NA	NA
UHGV-0305765_12	PHROG	phrog_16490	NA	unknown function
UHGV-0305765_12	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0305765_13	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0305765_14	PHROG	phrog_21718	NA	unknown function
UHGV-0305765_14	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0305765_15	UniRef90	UniRef90_A0A373NQ83	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0305765_15	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0305765_15	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0305765_16	PHROG	phrog_937	hemolysin	other
UHGV-0305765_17	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0305765_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-0305765_19	UniRef90	UniRef90_A0A352P898	S-l_SbsC_C domain-containing protein	NA
UHGV-0305765_19	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0305765_19	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0305765_19	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0305765_20	PHROG	phrog_909	major head protein	head and packaging
UHGV-0305765_20	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0305765_20	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0305765_20	Structural annotation	PF02924	NA	NA
UHGV-0305765_21	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0305765_21	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0305765_22	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0305765_22	UniRef90	UniRef90_K1V7A5	Phage Mu protein F like protein	NA
UHGV-0305765_22	eggNOG-mapper	1052684.PPM_2647	phage Mu protein	NA
UHGV-0305765_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0305765_22	COG	COG2369	NA	NA
UHGV-0305765_22	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0305765_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0305765_23	UniRef90	UniRef90_A0A373NRD8	Phage portal protein	NA
UHGV-0305765_23	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0305765_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0305765_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0305765_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0305765_24	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0305765_24	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0305765_24	Pfam	PF07374	NA	DUF1492
UHGV-0305765_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0305765_24	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0305765_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0305765_25	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0305765_25	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0305765_25	COG	COG5410	NA	NA
UHGV-0305765_25	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0305765_27	PHROG	phrog_13999	NA	unknown function
UHGV-0305765_27	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0305765_28	Structural annotation	PF09454	NA	NA
UHGV-0305765_35	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0305765_41	eggNOG-mapper	476272.RUMHYD_01911	NA	NA
UHGV-0305765_41	Structural annotation	PF08962	NA	NA
UHGV-0305765_42	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0305765_42	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0305765_42	UniRef90	UniRef90_A0A373NRE9	Recombinase family protein	NA
UHGV-0305765_42	eggNOG-mapper	476272.RUMHYD_01910	Resolvase, N terminal domain	NA
UHGV-0305765_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0305765_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0305765_42	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0305765_43	UniRef90	UniRef90_A0A4Q5ERS4	NA	NA
UHGV-0305765_43	eggNOG-mapper	536227.CcarbDRAFT_4360	NA	NA
UHGV-0305765_43	Pfam	PF20075	NA	DUF6471
UHGV-0305765_43	Structural annotation	PF20075, NF041951, COG3655	NA	NA
UHGV-0305765_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0305765_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0305765_44	UniRef90	UniRef90_A0A373NQ65	Phage antirepressor Ant	NA
UHGV-0305765_44	eggNOG-mapper	1352230.S6AVX3_9CAUD	DNA binding	NA
UHGV-0305765_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0305765_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0305765_44	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0305765_45	eggNOG-mapper	1232453.BAIF02000058_gene1620	NA	NA
UHGV-0305765_46	PHROG	phrog_8680	NA	unknown function
UHGV-0305765_46	UniRef90	UniRef90_A0A373NQS6	NA	NA
UHGV-0305765_46	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-0305765_46	Pfam	PF14386	NA	DUF4417
UHGV-0305765_46	Structural annotation	PF14386	NA	NA
UHGV-0305765_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0305765_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0305765_47	UniRef90	UniRef90_A0A373NR59	Recombinase family protein	NA
UHGV-0305765_47	eggNOG-mapper	457412.RSAG_00880	Resolvase, N terminal domain	NA
UHGV-0305765_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0305765_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-0305765_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0305765_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0305765_47	Structural annotation	PF07508, PF00239, PF14282, NF041201, COG1961, COG1579	NA	NA
UHGV-0305765_49	PHROG	phrog_9804	NA	unknown function
UHGV-0305765_49	UniRef90	UniRef90_A0A373NS51	Inhibitor_G39P domain-containing protein	NA
UHGV-0305765_49	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0305765_49	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0305765_49	Structural annotation	PF11417	NA	NA
UHGV-0305765_50	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0305765_50	UniRef90	UniRef90_A0A373NR46	Phage_rep_org_N domain-containing protein	NA
UHGV-0305765_50	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0305765_50	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0305765_50	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0305765_50	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0305765_51	UniRef90	UniRef90_A0A373NR35	NA	NA
UHGV-0305765_51	eggNOG-mapper	411459.RUMOBE_02036	NA	NA
UHGV-0305765_51	Pfam	PF14199	NA	DUF4317
UHGV-0305765_51	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0305765_52	Structural annotation	TIGR04116	NA	NA
UHGV-0305765_53	Structural annotation	PF17630	NA	NA
UHGV-0305765_54	PHROG	phrog_1455	NA	unknown function
UHGV-0305765_54	eggNOG-mapper	1334046.AYTB01000008_gene2301	NA	NA
UHGV-0305765_54	Pfam	PF21793	NA	DUF6877
UHGV-0305765_54	Structural annotation	PF21793	NA	NA
UHGV-0305765_55	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0305765_58	PHROG	phrog_20593	NA	unknown function
UHGV-0305765_59	PHROG	phrog_20593	NA	unknown function
UHGV-0305765_60	UniRef90	UniRef90_A0A395XB56	NA	NA
UHGV-0305765_61	PHROG	phrog_4601	NA	unknown function
UHGV-0305765_65	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0305765_65	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0305765_65	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0305765_65	Structural annotation	PF09202, MF_00732, NF008273, COG3388	NA	NA
UHGV-0305765_66	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-0305765_66	eggNOG-mapper	476272.RUMHYD_03349	NA	NA
UHGV-0305765_67	KOfam	K24451	zim; modification methylase	NA
UHGV-0305765_67	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0305765_67	UniRef90	UniRef90_A0A3R6Q0Y1	Methyltransferase	NA
UHGV-0305765_67	eggNOG-mapper	411473.RUMCAL_00273	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0305765_67	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0305765_67	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0305765_67	COG	COG0863	DNA modification methylase	NA
UHGV-0305765_67	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0305765_68	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0305765_68	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0305765_68	UniRef90	UniRef90_A0A3R6MX70	Helicase	NA
UHGV-0305765_68	eggNOG-mapper	411473.RUMCAL_00274	DEAD-like helicases superfamily	NA
UHGV-0305765_68	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0305765_68	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0305765_68	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0305765_68	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0305765_69	PHROG	phrog_19106	NA	unknown function
UHGV-0305765_69	UniRef90	UniRef90_A0A1C5S1S5	Group I intron endonuclease	NA
UHGV-0305765_69	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0305765_69	Structural annotation	TIGR01453	NA	NA
UHGV-0305765_70	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0305765_70	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0305765_70	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0305765_71	PHROG	phrog_2164	NA	unknown function
UHGV-0305765_71	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-0305765_72	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0305765_72	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0305765_72	UniRef90	UniRef90_A0A373NQD5	Single-stranded DNA-binding protein	NA
UHGV-0305765_72	eggNOG-mapper	411474.COPEUT_01783	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0305765_72	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0305765_72	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0305765_72	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0305765_72	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0305765_72	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0305765_76	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0305765_76	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0305765_76	UniRef90	UniRef90_A0A373NR15	MBL fold metallo-hydrolase	NA
UHGV-0305765_76	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0305765_76	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0305765_76	dbAPIS	APIS058	NA	NA
UHGV-0305765_76	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0305765_76	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0305765_78	PHROG	phrog_25456	NA	unknown function
UHGV-0305765_79	KOfam	K06940	NA	NA
UHGV-0305765_79	PHROG	phrog_32498	NA	unknown function
UHGV-0305765_79	UniRef90	UniRef90_A0A415HVR5	YkgJ family cysteine cluster protein	NA
UHGV-0305765_79	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0305765_79	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0305765_80	PHROG	phrog_2316	NA	unknown function
UHGV-0305765_80	UniRef90	UniRef90_A0A410QQZ5	NA	NA
UHGV-0305765_80	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0305765_80	Pfam	PF16475	NA	DUF5052
UHGV-0305765_80	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0305765_81	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0305765_81	UniRef90	UniRef90_A0A3E5EP23	PHB domain-containing protein	NA
UHGV-0305765_81	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0305765_81	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0305765_82	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0305765_82	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0305765_83	PHROG	phrog_15946	NA	unknown function
UHGV-0305765_83	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0305765_84	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0305765_84	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0305765_84	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0305765_84	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0305765_84	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0305765_84	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0305765_85	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0305765_85	PHROG	phrog_26861	NA	unknown function
UHGV-0305765_85	UniRef90	UniRef90_A0A373NQB7	Single-stranded DNA-binding protein	NA
UHGV-0305765_85	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0305765_85	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0305765_85	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0305765_85	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0305765_85	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0305765_86	PHROG	phrog_26861	NA	unknown function
UHGV-0305765_86	UniRef90	UniRef90_UPI001F33AC1F	single-stranded DNA-binding protein	NA
UHGV-0305765_86	eggNOG-mapper	580327.Tthe_1056	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0305765_86	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0305765_86	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0305765_86	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0305765_89	PHROG	phrog_4433	NA	unknown function
UHGV-0305765_89	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0305765_89	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0305765_95	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0305765_95	UniRef90	UniRef90_A0A3A6GZT3	Phage repressor protein	NA
UHGV-0305765_95	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0305765_95	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0305765_95	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0305765_95	COG	COG3617	Prophage antirepressor	NA
UHGV-0305765_95	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0305765_96	Structural annotation	PF06004	NA	NA
UHGV-0305765_99	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0305765_99	UniRef90	UniRef90_A0A373NRG3	ORF6N domain-containing protein	NA
UHGV-0305765_99	eggNOG-mapper	1444310.JANV01000162_gene1209	ORF6N domain	NA
UHGV-0305765_99	COG	COG3561	Phage anti-repressor protein Ant	NA