UHGV-0306220

Genome information

vOTU vOTU-031936

Genome length 25,745 bps

CDS count 35

Completeness 56.10% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0306220
vOTU ID	vOTU-031936
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_127031_round1256~1059553
BioSample	SAMN10285284
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.5
Jumbo phage	No

Genome content
Genome length	25,745 bps
GC content	50.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	91.13%
Average CDS length	673.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0306220_3	PHROG	phrog_14030	NA	unknown function
UHGV-0306220_3	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0306220_3	eggNOG-mapper	1235797.C816_02842	mannosyl-glycoprotein	NA
UHGV-0306220_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0306220_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0306220_3	Structural annotation	PF08460, PF10030, TIGR02594, NF041850, COG4322, COG4991	NA	NA
UHGV-0306220_5	PHROG	phrog_1863	NA	unknown function
UHGV-0306220_5	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0306220_6	PHROG	phrog_30034	NA	unknown function
UHGV-0306220_6	UniRef90	UniRef90_UPI001EDF4BF9	chitinase	NA
UHGV-0306220_6	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0306220_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0306220_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0306220_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0306220_7	UniRef90	UniRef90_UPI00164D8919	RNA-directed DNA polymerase	NA
UHGV-0306220_7	eggNOG-mapper	521003.COLINT_02359	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0306220_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0306220_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0306220_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0306220_7	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0306220_9	PHROG	phrog_30516	NA	unknown function
UHGV-0306220_9	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0306220_10	PHROG	phrog_37900	NA	unknown function
UHGV-0306220_10	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-0306220_10	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0306220_10	Pfam	PF19789	NA	DUF6273
UHGV-0306220_10	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0306220_10	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-0306220_11	PHROG	phrog_18725	NA	unknown function
UHGV-0306220_11	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0306220_12	PHROG	phrog_13879	NA	unknown function
UHGV-0306220_12	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-0306220_12	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0306220_13	PHROG	phrog_1194	NA	unknown function
UHGV-0306220_13	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0306220_13	Pfam	PF20458	NA	DUF6711
UHGV-0306220_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0306220_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0306220_14	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0306220_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0306220_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0306220_15	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0306220_16	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0306220_16	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0306220_16	Pfam	PF16478	NA	DUF5055
UHGV-0306220_16	Structural annotation	PF16478	NA	NA
UHGV-0306220_17	PHROG	phrog_158	major tail protein	tail
UHGV-0306220_17	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0306220_17	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0306220_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0306220_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0306220_18	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0306220_19	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0306220_20	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0306220_21	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0306220_21	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0306220_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0306220_21	Structural annotation	TIGR01560	NA	NA
UHGV-0306220_23	PHROG	phrog_247	major head protein	head and packaging
UHGV-0306220_23	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0306220_23	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0306220_23	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0306220_24	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0306220_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0306220_26	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0306220_26	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0306220_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0306220_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0306220_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0306220_27	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0306220_27	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0306220_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0306220_27	COG	COG5410	NA	NA
UHGV-0306220_27	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0306220_28	UniRef90	UniRef90_A0A1T4KNQ3	Zinc-ribbon domain-containing protein	NA
UHGV-0306220_28	Structural annotation	PF19569, COG3427	NA	NA
UHGV-0306220_29	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0306220_29	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0306220_29	UniRef90	UniRef90_H1CEQ0	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0306220_29	eggNOG-mapper	1345695.CLSA_c29990	Resolvase, N terminal domain	NA
UHGV-0306220_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0306220_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0306220_29	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0306220_30	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0306220_30	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0306220_30	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0306220_34	PHROG	phrog_4264	NA	unknown function
UHGV-0306220_34	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-0306220_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0306220_35	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0306220_35	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-0306220_35	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0306220_35	Structural annotation	PF16677	NA	NA