UHGV-0306796

Genome information

vOTU vOTU-011925

Genome length 37,742 bps

CDS count 71

Completeness 91.58% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0306796
vOTU ID	vOTU-011925
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1190652_119_4897_round8-12~2460625
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.76
Jumbo phage	No

Genome content
Genome length	37,742 bps
GC content	54.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	93.11%
Average CDS length	500.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0306796_1	PHROG	phrog_17977	NA	unknown function
UHGV-0306796_1	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0306796_1	Structural annotation	TIGR01563	NA	NA
UHGV-0306796_2	PHROG	phrog_17405	head protein	head and packaging
UHGV-0306796_2	Structural annotation	PF11367	NA	NA
UHGV-0306796_3	PHROG	phrog_885	major tail protein	tail
UHGV-0306796_3	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0306796_3	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0306796_3	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0306796_4	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0306796_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0306796_5	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-0306796_5	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0306796_5	COG	COG1511	NA	NA
UHGV-0306796_5	Structural annotation	PF20155	NA	NA
UHGV-0306796_6	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0306796_7	PHROG	phrog_6616	tail protein	tail
UHGV-0306796_7	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0306796_7	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0306796_7	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0306796_8	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0306796_8	Structural annotation	PF14594	NA	NA
UHGV-0306796_9	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0306796_9	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0306796_9	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0306796_9	Structural annotation	PF21605, NF041825, COG3198	NA	NA
UHGV-0306796_11	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0306796_11	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0306796_11	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0306796_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0306796_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0306796_12	PHROG	phrog_37900	NA	unknown function
UHGV-0306796_12	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0306796_12	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0306796_12	Pfam	PF19789	NA	DUF6273
UHGV-0306796_12	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0306796_12	Structural annotation	PF19789, PF03785	NA	NA
UHGV-0306796_14	PHROG	phrog_27545	NA	unknown function
UHGV-0306796_14	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0306796_14	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0306796_14	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0306796_15	PHROG	phrog_937	hemolysin	other
UHGV-0306796_15	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0306796_17	PHROG	phrog_13256	NA	unknown function
UHGV-0306796_17	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0306796_18	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0306796_18	PHROG	phrog_6523	endolysin	lysis
UHGV-0306796_18	UniRef90	UniRef90_A0A316L774	SLH domain-containing protein	NA
UHGV-0306796_18	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0306796_18	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0306796_18	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0306796_18	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0306796_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0306796_24	KOfam	K14059	int; integrase	NA
UHGV-0306796_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0306796_24	UniRef90	UniRef90_G4L0W3	Tyr recombinase domain-containing protein	NA
UHGV-0306796_24	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0306796_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0306796_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0306796_24	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0306796_25	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0306796_25	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0306796_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0306796_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0306796_25	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0306796_26	PHROG	phrog_301	secreted protein	other
UHGV-0306796_26	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0306796_26	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0306796_29	PHROG	phrog_585	NA	unknown function
UHGV-0306796_29	UniRef90	UniRef90_UPI000F79CF5C	NA	NA
UHGV-0306796_29	eggNOG-mapper	1280692.AUJL01000009_gene2980	NA	NA
UHGV-0306796_29	Pfam	PF10711	NA	DUF2513
UHGV-0306796_29	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0306796_30	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0306796_30	Structural annotation	NF041951, COG3655	NA	NA
UHGV-0306796_31	eggNOG-mapper	1216932.CM240_0696	NA	NA
UHGV-0306796_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0306796_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0306796_32	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0306796_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0306796_34	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0306796_34	UniRef90	UniRef90_UPI001379CF69	phage antirepressor KilAC domain-containing protein	NA
UHGV-0306796_34	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0306796_34	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0306796_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0306796_34	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0306796_34	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0306796_35	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0306796_35	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0306796_37	PHROG	phrog_22529	NA	unknown function
UHGV-0306796_37	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0306796_37	eggNOG-mapper	1298920.KI911353_gene568	3D domain	NA
UHGV-0306796_37	Pfam	PF06725	3D domain	3D
UHGV-0306796_37	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0306796_37	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0306796_39	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0306796_39	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0306796_39	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0306796_39	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0306796_39	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0306796_39	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0306796_39	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0306796_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0306796_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0306796_40	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0306796_40	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0306796_40	Pfam	PF03837	RecT family	RecT
UHGV-0306796_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0306796_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0306796_40	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0306796_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0306796_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0306796_41	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0306796_41	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0306796_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0306796_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0306796_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0306796_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0306796_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0306796_43	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0306796_43	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0306796_43	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0306796_43	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0306796_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0306796_43	Structural annotation	PF14297	NA	NA
UHGV-0306796_44	PHROG	phrog_9804	NA	unknown function
UHGV-0306796_44	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0306796_44	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0306796_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0306796_44	Structural annotation	PF11417	NA	NA
UHGV-0306796_45	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0306796_45	UniRef90	UniRef90_UPI001BB47464	NA	NA
UHGV-0306796_45	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0306796_45	Pfam	PF06356	NA	DUF1064
UHGV-0306796_45	Structural annotation	PF06356	NA	NA
UHGV-0306796_47	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0306796_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0306796_47	UniRef90	UniRef90_UPI00115BCC30	helix-turn-helix domain-containing protein	NA
UHGV-0306796_47	eggNOG-mapper	760568.Desku_2016	PFAM Helix-turn-helix	NA
UHGV-0306796_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0306796_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0306796_47	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0306796_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0306796_47	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0306796_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0306796_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0306796_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0306796_49	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0306796_49	UniRef90	UniRef90_UPI000F065B6D	adenine methyltransferase	NA
UHGV-0306796_49	eggNOG-mapper	1450694.BTS2_0497	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0306796_49	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0306796_49	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0306796_49	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0306796_50	PHROG	phrog_27610	NA	unknown function
UHGV-0306796_51	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0306796_51	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0306796_52	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0306796_53	PHROG	phrog_38832	NA	unknown function
UHGV-0306796_53	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0306796_54	PHROG	phrog_22543	NA	unknown function
UHGV-0306796_59	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0306796_59	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0306796_59	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0306796_60	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0306796_60	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0306796_60	Structural annotation	PF13542	NA	NA
UHGV-0306796_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0306796_62	PHROG	phrog_10250	NA	unknown function
UHGV-0306796_62	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0306796_62	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0306796_62	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0306796_62	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0306796_62	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0306796_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0306796_62	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0306796_63	PHROG	phrog_64	portal protein	head and packaging
UHGV-0306796_63	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0306796_63	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0306796_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0306796_63	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0306796_64	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0306796_64	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0306796_64	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0306796_64	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0306796_64	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0306796_64	COG	COG2369	NA	NA
UHGV-0306796_64	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0306796_66	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0306796_66	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0306796_66	eggNOG-mapper	1445809.A0A0A7AQU9_9CAUD	NA	NA
UHGV-0306796_66	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0306796_66	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0306796_66	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0306796_67	Structural annotation	PF18152	NA	NA
UHGV-0306796_68	UniRef90	UniRef90_B6CXE3	Fibronectin autolysin	NA
UHGV-0306796_68	Structural annotation	PF06810	NA	NA
UHGV-0306796_69	PHROG	phrog_267	major head protein	head and packaging
UHGV-0306796_69	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0306796_69	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0306796_69	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0306796_69	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA