UHGV-0307024

Genome information

vOTU vOTU-031942

Genome length 27,806 bps

CDS count 49

Completeness 71.04% (medium-quality)

geNomad score 0.9642

Prediction confidence Confident

Genome information
Genome ID	UHGV-0307024
vOTU ID	vOTU-031942
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1190635_119_72125_round8-12~3624903
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9642
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.64
Jumbo phage	No

Genome content
Genome length	27,806 bps
GC content	29.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	87.40%
Average CDS length	497.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0307024_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0307024_1	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0307024_1	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0307024_1	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0307024_1	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0307024_2	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0307024_3	PHROG	phrog_6616	tail protein	tail
UHGV-0307024_3	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0307024_3	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0307024_3	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0307024_4	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0307024_4	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0307024_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0307024_4	COG	COG4926	Phage-related protein	NA
UHGV-0307024_4	Structural annotation	COG4926	NA	NA
UHGV-0307024_5	Structural annotation	PF03906	NA	NA
UHGV-0307024_6	PHROG	phrog_5717	tail protein	tail
UHGV-0307024_6	UniRef90	UniRef90_A0A099I3H7	Pilus assembly protein (Fragment)	NA
UHGV-0307024_6	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0307024_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0307024_6	Structural annotation	COG4675	NA	NA
UHGV-0307024_7	PHROG	phrog_937	hemolysin	other
UHGV-0307024_7	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0307024_8	PHROG	phrog_1129	holin	lysis
UHGV-0307024_8	UniRef90	UniRef90_A0A1Q6M1T2	Holin	NA
UHGV-0307024_8	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0307024_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0307024_8	Structural annotation	PF06946	NA	NA
UHGV-0307024_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0307024_11	PHROG	phrog_1493	endolysin	lysis
UHGV-0307024_11	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0307024_11	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0307024_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0307024_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0307024_11	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0307024_11	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0307024_15	KOfam	K14059	int; integrase	NA
UHGV-0307024_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0307024_15	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0307024_15	eggNOG-mapper	857293.CAAU_0761	Belongs to the 'phage' integrase family	NA
UHGV-0307024_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0307024_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0307024_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0307024_15	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0307024_16	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0307024_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0307024_16	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0307024_16	eggNOG-mapper	1403313.AXBR01000018_gene3552	Peptidase S24-like	NA
UHGV-0307024_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0307024_16	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0307024_16	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0307024_16	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0307024_17	UniRef90	UniRef90_UPI00036D0E74	helix-turn-helix domain-containing protein	NA
UHGV-0307024_17	eggNOG-mapper	1131462.DCF50_p1827	NA	NA
UHGV-0307024_17	Structural annotation	PF05339, NF007271, COG3655	NA	NA
UHGV-0307024_18	Structural annotation	PF21531, NF033787	NA	NA
UHGV-0307024_22	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0307024_22	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0307024_22	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0307024_22	eggNOG-mapper	574376.BAMA_10335	SpoVT / AbrB like domain	NA
UHGV-0307024_22	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0307024_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0307024_22	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0307024_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0307024_24	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0307024_24	eggNOG-mapper	97138.C820_00779	Siphovirus Gp157	NA
UHGV-0307024_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0307024_24	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0307024_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0307024_25	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0307024_25	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0307024_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-0307024_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0307024_25	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0307024_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0307024_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0307024_26	UniRef90	UniRef90_R6B7C1	Single-stranded DNA-binding protein	NA
UHGV-0307024_26	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-0307024_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0307024_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0307024_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0307024_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0307024_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0307024_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0307024_27	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0307024_27	Pfam	PF05772	NinB protein	NinB
UHGV-0307024_27	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0307024_28	PHROG	phrog_7566	NA	unknown function
UHGV-0307024_29	PHROG	phrog_16304	NA	unknown function
UHGV-0307024_29	UniRef90	UniRef90_UPI001D0811D8	NA	NA
UHGV-0307024_29	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0307024_29	Pfam	PF19808	NA	DUF6291
UHGV-0307024_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0307024_29	Structural annotation	PF19808	NA	NA
UHGV-0307024_30	PHROG	phrog_9804	NA	unknown function
UHGV-0307024_30	UniRef90	UniRef90_A0A1I2QMA2	Loader and inhibitor of phage G40P	NA
UHGV-0307024_30	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0307024_30	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0307024_30	Structural annotation	PF11417	NA	NA
UHGV-0307024_31	PHROG	phrog_10201	NA	unknown function
UHGV-0307024_32	PHROG	phrog_1123	NA	unknown function
UHGV-0307024_32	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0307024_32	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0307024_32	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0307024_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0307024_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0307024_33	UniRef90	UniRef90_A0A1Q6TZF2	Methyltransferase	NA
UHGV-0307024_33	eggNOG-mapper	469596.HMPREF9488_00879	DNA methylase	NA
UHGV-0307024_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0307024_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0307024_33	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0307024_33	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0307024_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0307024_34	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0307024_34	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0307024_34	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0307024_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0307024_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0307024_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0307024_36	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-0307024_37	PHROG	phrog_23490	NA	unknown function
UHGV-0307024_37	UniRef90	UniRef90_R6RLI7	YoqE	NA
UHGV-0307024_38	eggNOG-mapper	927658.AJUM01000016_gene3158	N-6 DNA Methylase	NA
UHGV-0307024_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0307024_41	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0307024_41	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0307024_41	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0307024_41	eggNOG-mapper	1294142.CINTURNW_1879	tRNA-splicing ligase RtcB	NA
UHGV-0307024_41	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0307024_41	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0307024_41	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0307024_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0307024_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0307024_45	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-0307024_48	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0307024_48	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0307024_48	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0307024_48	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0307024_48	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0307024_48	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0307024_48	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0307024_49	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0307024_49	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-0307024_49	eggNOG-mapper	1232449.BAHV02000018_gene1531	Phage terminase, large subunit, PBSX family	NA
UHGV-0307024_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0307024_49	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA