UHGV-0308177

Genome information

vOTU vOTU-011927

Genome length 47,568 bps

CDS count 67

Completeness 98.07% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0308177
vOTU ID	vOTU-011927
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR479048_99_97047_round347~4508596
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.34
Jumbo phage	No

Genome content
Genome length	47,568 bps
GC content	35.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.21%
Average CDS length	630.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0308177_8	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0308177_8	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0308177_8	UniRef90	UniRef90_A0A2E7GI35	dUTP diphosphatase	NA
UHGV-0308177_8	eggNOG-mapper	548477.HMPREF0294_1905	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0308177_8	Pfam	PF00692	dUTPase	dUTPase
UHGV-0308177_8	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0308177_8	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0308177_8	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0308177_9	PHROG	phrog_1065	NA	unknown function
UHGV-0308177_9	eggNOG-mapper	1410625.JHWK01000002_gene90	NA	NA
UHGV-0308177_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0308177_10	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0308177_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0308177_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0308177_11	UniRef90	UniRef90_UPI000425573B	replicative DNA helicase	NA
UHGV-0308177_11	eggNOG-mapper	1120988.AXWV01000032_gene1858	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0308177_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0308177_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0308177_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0308177_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0308177_15	UniRef90	UniRef90_UPI0015E0C945	YqaJ viral recombinase family protein	NA
UHGV-0308177_15	eggNOG-mapper	315749.Bcer98_2619	YqaJ-like viral recombinase domain	NA
UHGV-0308177_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0308177_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0308177_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0308177_16	PHROG	phrog_252	Bet-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0308177_16	Pfam	PF03837	RecT family	RecT
UHGV-0308177_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0308177_19	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0308177_19	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0308177_19	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0308177_20	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0308177_20	PHROG	phrog_7	endolysin	lysis
UHGV-0308177_20	UniRef90	UniRef90_Q3ASQ2	Lysozyme	NA
UHGV-0308177_20	eggNOG-mapper	340177.Cag_0702	cytolysis by virus of host cell	NA
UHGV-0308177_20	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0308177_20	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0308177_20	HAMAP	MF_04110	Endolysin	NA
UHGV-0308177_20	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0308177_22	Structural annotation	PF20901	NA	NA
UHGV-0308177_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0308177_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0308177_23	UniRef90	UniRef90_A0A6J5LE99	Terminase-like family	NA
UHGV-0308177_23	eggNOG-mapper	1203554.HMPREF1476_00248	Terminase RNaseH-like domain	NA
UHGV-0308177_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0308177_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0308177_23	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0308177_24	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0308177_24	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0308177_26	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0308177_26	UniRef90	UniRef90_UPI000D8E968E	portal protein	NA
UHGV-0308177_26	eggNOG-mapper	194699.PORTL_BPBPP	Bacteriophage head to tail connecting protein	NA
UHGV-0308177_26	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0308177_26	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0308177_27	PHROG	phrog_528	NA	unknown function
UHGV-0308177_28	PHROG	phrog_458	protease	other
UHGV-0308177_28	UniRef90	UniRef90_A0A024J472	Putative protease	NA
UHGV-0308177_28	eggNOG-mapper	82995.CR62_16680	NA	NA
UHGV-0308177_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-0308177_29	UniRef90	UniRef90_A0A6J5P2C9	Major capsid protein	NA
UHGV-0308177_29	eggNOG-mapper	82995.CR62_16685	NA	NA
UHGV-0308177_29	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0308177_29	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0308177_30	Pfam	PF21190	Bbp16	Bbp16
UHGV-0308177_30	Structural annotation	PF21190	NA	NA
UHGV-0308177_31	PHROG	phrog_394	tail protein	tail
UHGV-0308177_31	UniRef90	UniRef90_K0MCD7	NA	NA
UHGV-0308177_31	eggNOG-mapper	343516.Q287A4_9CAUD	Pfam:Tube	NA
UHGV-0308177_31	Structural annotation	PF17212	NA	NA
UHGV-0308177_32	PHROG	phrog_376	tail protein	tail
UHGV-0308177_32	eggNOG-mapper	557598.LHK_01546	NA	NA
UHGV-0308177_32	Structural annotation	PF11134, PF13157, MF_03037, TIGR02658, COG4257	NA	NA
UHGV-0308177_35	PHROG	phrog_9880	NA	unknown function
UHGV-0308177_35	eggNOG-mapper	1316936.K678_00185	NA	NA
UHGV-0308177_38	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0308177_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0308177_45	PHROG	phrog_1065	NA	unknown function
UHGV-0308177_45	eggNOG-mapper	1410625.JHWK01000002_gene90	NA	NA
UHGV-0308177_50	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-0308177_56	PHROG	phrog_4264	NA	unknown function