UHGV-0308376

Genome information

vOTU vOTU-020547

Genome length 26,999 bps

CDS count 42

Completeness 65.21% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0308376
vOTU ID	vOTU-020547
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_8796_round1256~2258864
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.9
Jumbo phage	No

Genome content
Genome length	26,999 bps
GC content	39.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.35%
Average CDS length	596.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0308376_2	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0308376_2	UniRef90	UniRef90_A0A4P8KAU9	Phage regulatory protein	NA
UHGV-0308376_2	eggNOG-mapper	673832.D2IYT0_9CAUD	DNA binding	NA
UHGV-0308376_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0308376_2	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0308376_2	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0308376_2	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0308376_3	eggNOG-mapper	565664.EFXG_01800	NA	NA
UHGV-0308376_3	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0308376_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0308376_4	UniRef90	UniRef90_A0A4P8KKZ8	XRE family transcriptional regulator	NA
UHGV-0308376_4	eggNOG-mapper	1545701.LACWKB10_1147	Helix-turn-helix XRE-family like proteins	NA
UHGV-0308376_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0308376_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0308376_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0308376_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0308376_5	UniRef90	UniRef90_A0A4P8K8X6	XRE family transcriptional regulator	NA
UHGV-0308376_5	eggNOG-mapper	1121864.OMO_01357	Helix-turn-helix XRE-family like proteins	NA
UHGV-0308376_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0308376_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0308376_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0308376_6	PHROG	phrog_87	metallo-protease	other
UHGV-0308376_6	UniRef90	UniRef90_A0A4P8KA03	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0308376_6	eggNOG-mapper	1121864.OMO_01358	IrrE N-terminal-like domain	NA
UHGV-0308376_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0308376_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0308376_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0308376_7	PHROG	phrog_7823	NA	unknown function
UHGV-0308376_7	eggNOG-mapper	768486.EHR_00875	NA	NA
UHGV-0308376_8	KOfam	K14059	int; integrase	NA
UHGV-0308376_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0308376_8	UniRef90	UniRef90_A0A4P8KL88	Site-specific integrase	NA
UHGV-0308376_8	eggNOG-mapper	1158604.I591_01805	Belongs to the 'phage' integrase family	NA
UHGV-0308376_8	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0308376_8	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0308376_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0308376_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0308376_8	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0308376_9	PHROG	phrog_16307	NA	unknown function
UHGV-0308376_9	eggNOG-mapper	1158614.I592_00648	NA	NA
UHGV-0308376_10	eggNOG-mapper	1158602.I590_03019	NA	NA
UHGV-0308376_11	eggNOG-mapper	1158614.I592_00646	NA	NA
UHGV-0308376_11	Structural annotation	PF01336, MF_01959, NF009729, COG2332	NA	NA
UHGV-0308376_12	PHROG	phrog_8263	NA	unknown function
UHGV-0308376_13	PHROG	phrog_13463	endolysin	lysis
UHGV-0308376_13	UniRef90	UniRef90_R2RM83	NlpC/P60 domain-containing protein	NA
UHGV-0308376_13	eggNOG-mapper	1140002.I570_01424	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0308376_13	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0308376_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0308376_13	Structural annotation	PF05382, TIGR02219, COG0791	NA	NA
UHGV-0308376_14	PHROG	phrog_32897	NA	unknown function
UHGV-0308376_14	eggNOG-mapper	1158602.I590_01701	NA	NA
UHGV-0308376_15	PHROG	phrog_199	holin	lysis
UHGV-0308376_15	UniRef90	UniRef90_A0A7H4KLL2	Holin	NA
UHGV-0308376_15	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0308376_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0308376_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0308376_16	PHROG	phrog_134	NA	unknown function
UHGV-0308376_16	UniRef90	UniRef90_A0A345FSS3	XkdX family protein	NA
UHGV-0308376_16	eggNOG-mapper	1158607.UAU_01049	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0308376_16	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0308376_16	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0308376_17	PHROG	phrog_1536	NA	unknown function
UHGV-0308376_17	eggNOG-mapper	1158607.UAU_01048	NA	NA
UHGV-0308376_18	PHROG	phrog_7911	tail protein	tail
UHGV-0308376_18	UniRef90	UniRef90_C9BVF1	Predicted protein	NA
UHGV-0308376_18	eggNOG-mapper	1158601.I585_04169	NA	NA
UHGV-0308376_18	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0308376_19	PHROG	phrog_6907	NA	unknown function
UHGV-0308376_19	UniRef90	UniRef90_A0A2T5D5H6	Collagen-like protein	NA
UHGV-0308376_19	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-0308376_20	PHROG	phrog_9625	NA	unknown function
UHGV-0308376_20	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-0308376_21	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0308376_21	UniRef90	UniRef90_A0A7H4KLL8	BppU_N domain-containing protein	NA
UHGV-0308376_21	eggNOG-mapper	1158607.UAU_01044	NA	NA
UHGV-0308376_21	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0308376_21	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0308376_22	PHROG	phrog_11857	NA	unknown function
UHGV-0308376_22	UniRef90	UniRef90_A0A7H4KLL9	Phage minor structural protein	NA
UHGV-0308376_22	eggNOG-mapper	1158607.UAU_01043	Phage minor structural protein	NA
UHGV-0308376_22	Pfam	PF05257	CHAP domain	CHAP
UHGV-0308376_22	COG	COG4926	Phage-related protein	NA
UHGV-0308376_23	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0308376_23	UniRef90	UniRef90_A0A828ZZI7	Phage minor structural protein	NA
UHGV-0308376_23	eggNOG-mapper	1158612.I580_01364	Prophage endopeptidase tail	NA
UHGV-0308376_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0308376_23	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0308376_23	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0308376_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0308376_23	COG	COG4926	Phage-related protein	NA
UHGV-0308376_23	Structural annotation	PF14594, PF18013, TIGR01665, NF041249, COG4926	NA	NA
UHGV-0308376_24	PHROG	phrog_5163	minor tail protein	tail
UHGV-0308376_24	UniRef90	UniRef90_UPI0010F65349	phage tail family protein	NA
UHGV-0308376_24	eggNOG-mapper	1158610.UC3_03184	Phage tail protein	NA
UHGV-0308376_24	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0308376_24	COG	COG4722	Phage-related protein YomH	NA
UHGV-0308376_24	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0308376_25	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0308376_25	UniRef90	UniRef90_A0A8B5VYS3	Phage tail tape measure protein	NA
UHGV-0308376_25	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0308376_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0308376_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0308376_26	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0308376_26	eggNOG-mapper	226185.EF_1287	NA	NA
UHGV-0308376_27	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0308376_27	UniRef90	UniRef90_A0A1B4XN81	Tail assembly chaperone	NA
UHGV-0308376_27	eggNOG-mapper	1201292.DR75_349	Phage tail assembly chaperone protein, TAC	NA
UHGV-0308376_27	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0308376_27	Structural annotation	PF12363	NA	NA
UHGV-0308376_28	PHROG	phrog_238	major tail protein	tail
UHGV-0308376_28	UniRef90	UniRef90_A0A7U6QXZ9	Phage major tail protein, TP901-1 family	NA
UHGV-0308376_28	eggNOG-mapper	1201292.DR75_348	Phage tail tube protein	NA
UHGV-0308376_28	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0308376_28	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0308376_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0308376_29	PHROG	phrog_176	tail terminator	connector
UHGV-0308376_29	UniRef90	UniRef90_UPI00118564FA	NA	NA
UHGV-0308376_29	eggNOG-mapper	663241.C9E2J9_9CAUD	NA	NA
UHGV-0308376_29	Structural annotation	PF11367	NA	NA
UHGV-0308376_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0308376_30	UniRef90	UniRef90_UPI0010F438E4	HK97 gp10 family phage protein	NA
UHGV-0308376_30	eggNOG-mapper	565664.EFXG_01171	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0308376_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0308376_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0308376_30	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0308376_31	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0308376_31	UniRef90	UniRef90_Q38175	B3 protein (Fragment)	NA
UHGV-0308376_31	eggNOG-mapper	663241.C9E2J7_9CAUD	NA	NA
UHGV-0308376_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0308376_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0308376_32	UniRef90	UniRef90_UPI0003F65BCF	phage head-tail connector protein	NA
UHGV-0308376_32	eggNOG-mapper	1486428.A0A097BY55_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0308376_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0308376_32	Structural annotation	PF05135	NA	NA
UHGV-0308376_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0308376_33	UniRef90	UniRef90_UPI0008D49F30	phage major capsid protein	NA
UHGV-0308376_33	eggNOG-mapper	1486428.A0A097BY54_9CAUD	peptidase activity	NA
UHGV-0308376_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0308376_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0308376_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0308376_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0308376_34	UniRef90	UniRef90_UPI000403BFA7	NA	NA
UHGV-0308376_34	eggNOG-mapper	1486428.A0A097BY91_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-0308376_34	Pfam	PF14265	NA	DUF4355
UHGV-0308376_34	Structural annotation	PF14265	NA	NA
UHGV-0308376_35	PHROG	phrog_34764	NA	unknown function
UHGV-0308376_36	PHROG	phrog_5859	NA	unknown function
UHGV-0308376_36	eggNOG-mapper	1158602.I590_02562	NA	NA
UHGV-0308376_36	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0308376_37	PHROG	phrog_15244	NA	unknown function
UHGV-0308376_39	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0308376_39	UniRef90	UniRef90_A0A8B5VYX2	Phage head morphogenesis protein	NA
UHGV-0308376_39	eggNOG-mapper	1139219.I569_01382	Phage Mu protein F like protein	NA
UHGV-0308376_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0308376_39	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0308376_39	COG	COG2369	NA	NA
UHGV-0308376_39	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0308376_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-0308376_40	UniRef90	UniRef90_UPI0008A14029	phage portal protein	NA
UHGV-0308376_40	eggNOG-mapper	1486428.A0A097BY86_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0308376_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0308376_40	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0308376_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0308376_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0308376_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0308376_41	UniRef90	UniRef90_A0A200HRH6	PBSX family phage terminase, large subunit	NA
UHGV-0308376_41	eggNOG-mapper	1140002.I570_01446	Terminase RNAseH like domain	NA
UHGV-0308376_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0308376_41	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0308376_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0308376_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0308376_41	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0308376_41	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0308376_42	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0308376_42	UniRef90	UniRef90_S0L258	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0308376_42	eggNOG-mapper	1140002.I570_01447	Helix-turn-helix of insertion element transposase	NA
UHGV-0308376_42	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0308376_42	Structural annotation	PF13022	NA	NA