UHGV-0309089

Genome information

vOTU vOTU-020549

Genome length 50,935 bps

CDS count 74

Completeness 78.24% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0309089
vOTU ID	vOTU-020549
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8133874_141_3892_round1256~1320307
BioSample	SAMN10342703
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.25
Jumbo phage	No

Genome content
Genome length	50,935 bps
GC content	55.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	88.28%
Average CDS length	611.19 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0309089_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0309089_1	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0309089_1	UniRef90	UniRef90_A0A0A7I6T1	HNHc domain-containing protein	NA
UHGV-0309089_1	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-0309089_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0309089_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0309089_2	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0309089_2	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-0309089_2	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0309089_3	PHROG	phrog_226	minor tail protein	tail
UHGV-0309089_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0309089_4	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0309089_4	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0309089_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0309089_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0309089_5	PHROG	phrog_104	portal protein	head and packaging
UHGV-0309089_5	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-0309089_5	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0309089_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0309089_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0309089_6	PHROG	phrog_36668	NA	unknown function
UHGV-0309089_6	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0309089_6	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0309089_6	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0309089_7	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-0309089_7	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0309089_8	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0309089_8	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0309089_8	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0309089_8	Structural annotation	PF02924	NA	NA
UHGV-0309089_9	PHROG	phrog_29	major head protein	head and packaging
UHGV-0309089_9	UniRef90	UniRef90_UPI0018C2985B	major capsid protein	NA
UHGV-0309089_9	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0309089_9	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0309089_9	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0309089_10	PHROG	phrog_36776	NA	unknown function
UHGV-0309089_10	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0309089_11	PHROG	phrog_25853	NA	unknown function
UHGV-0309089_11	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0309089_11	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-0309089_11	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0309089_12	PHROG	phrog_32608	NA	unknown function
UHGV-0309089_12	Structural annotation	PF17395	NA	NA
UHGV-0309089_13	eggNOG-mapper	35760.BCHO_0835	NA	NA
UHGV-0309089_13	Structural annotation	PF12691	NA	NA
UHGV-0309089_14	PHROG	phrog_117	major tail protein	tail
UHGV-0309089_14	UniRef90	UniRef90_A0A087AF65	Gp22	NA
UHGV-0309089_14	eggNOG-mapper	35760.BCHO_0834	NA	NA
UHGV-0309089_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0309089_15	PHROG	phrog_36579	NA	unknown function
UHGV-0309089_17	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0309089_17	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-0309089_17	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0309089_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0309089_17	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0309089_18	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0309089_18	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0309089_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0309089_19	PHROG	phrog_538	minor tail protein	tail
UHGV-0309089_19	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0309089_19	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0309089_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0309089_21	PHROG	phrog_9994	NA	unknown function
UHGV-0309089_21	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0309089_21	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0309089_25	KOfam	K14059	int; integrase	NA
UHGV-0309089_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0309089_25	UniRef90	UniRef90_A0A173YYH4	Phage integrase	NA
UHGV-0309089_25	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0309089_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0309089_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0309089_25	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0309089_27	eggNOG-mapper	566552.BIFCAT_00855	outer membrane autotransporter barrel domain protein	NA
UHGV-0309089_27	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0309089_28	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0309089_28	UniRef90	UniRef90_A0A345AR84	Tail fiber protein	NA
UHGV-0309089_28	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-0309089_28	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0309089_31	KOfam	K07273	acm; lysozyme	NA
UHGV-0309089_31	PHROG	phrog_291	endolysin	lysis
UHGV-0309089_31	UniRef90	UniRef90_A0A564VKS8	Autolytic lysozyme	NA
UHGV-0309089_31	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0309089_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0309089_31	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0309089_31	Pfam	PF01476	LysM domain	LysM
UHGV-0309089_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0309089_31	Structural annotation	PF01183, TIGR02899, TIGR00683, COG3757	NA	NA
UHGV-0309089_32	PHROG	phrog_881	holin	lysis
UHGV-0309089_32	UniRef90	UniRef90_A0A413KBR1	Holin	NA
UHGV-0309089_32	eggNOG-mapper	78345.BMERY_0861	Putative phage holin Dp-1	NA
UHGV-0309089_32	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0309089_32	Structural annotation	PF16938	NA	NA
UHGV-0309089_34	KOfam	K14059	int; integrase	NA
UHGV-0309089_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0309089_34	UniRef90	UniRef90_A7A5K0	Site-specific recombinase, phage integrase family	NA
UHGV-0309089_34	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0309089_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0309089_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0309089_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0309089_34	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0309089_35	KOfam	K07496	K07496; putative transposase	NA
UHGV-0309089_35	PHROG	phrog_506	transposase	integration and excision
UHGV-0309089_35	UniRef90	UniRef90_I3BMU5	Transposase, IS605 OrfB family	NA
UHGV-0309089_35	eggNOG-mapper	491915.Aflv_2234	transposase, IS605 OrfB family	NA
UHGV-0309089_35	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0309089_35	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0309089_35	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0309089_35	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0309089_35	COG	COG0675	Transposase	NA
UHGV-0309089_36	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0309089_36	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0309089_36	UniRef90	UniRef90_A0A564VW46	Thymidylate synthase	NA
UHGV-0309089_36	eggNOG-mapper	1240349.ANGC01000001_gene2516	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0309089_36	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0309089_36	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-0309089_36	COG	COG0207	Thymidylate synthase	NA
UHGV-0309089_36	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-0309089_36	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA
UHGV-0309089_38	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0309089_38	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0309089_38	UniRef90	UniRef90_A0A1X3A1Y7	DNA polymerase III subunit alpha	NA
UHGV-0309089_38	eggNOG-mapper	269800.Tfu_0902	EXOIII	NA
UHGV-0309089_38	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0309089_38	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0309089_38	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0309089_38	Structural annotation	PF00929, MF_00157, TIGR01298, COG0847	NA	NA
UHGV-0309089_39	UniRef90	UniRef90_UPI001F51007C	helix-turn-helix transcriptional regulator	NA
UHGV-0309089_40	UniRef90	UniRef90_A0A1X3A205	HTH cro/C1-type domain-containing protein	NA
UHGV-0309089_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0309089_40	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0309089_40	Structural annotation	PF08667, MF_00535, NF041951, COG3655	NA	NA
UHGV-0309089_41	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0309089_41	PHROG	phrog_9562	NA	unknown function
UHGV-0309089_41	UniRef90	UniRef90_A7A2N4	Pentapeptide repeat protein	NA
UHGV-0309089_41	eggNOG-mapper	1235799.C818_02571	Pentapeptide repeats (9 copies)	NA
UHGV-0309089_41	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0309089_41	Pfam	PF19062	NA	DUF5758
UHGV-0309089_41	COG	COG1357	NA	NA
UHGV-0309089_41	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0309089_42	UniRef90	UniRef90_W4N9K9	Phosphoglycerate dehydrogenase	NA
UHGV-0309089_42	eggNOG-mapper	566552.BIFCAT_00894	NA	NA
UHGV-0309089_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0309089_43	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-0309089_43	UniRef90	UniRef90_A0A1X2ZGV6	Antirepressor	NA
UHGV-0309089_43	eggNOG-mapper	566552.BIFCAT_00893	P22_AR N-terminal domain	NA
UHGV-0309089_43	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0309089_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0309089_43	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0309089_43	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-0309089_45	PHROG	phrog_774	NA	unknown function
UHGV-0309089_47	KOfam	K04074	divIVA; cell division initiation protein	NA
UHGV-0309089_47	UniRef90	UniRef90_A0A564VUN2	Cell wall synthesis protein Wag31	NA
UHGV-0309089_47	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-0309089_47	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0309089_47	COG	COG3599	Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD	NA
UHGV-0309089_47	Structural annotation	PF05103, MF_02011, NF010725	NA	NA
UHGV-0309089_48	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0309089_49	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0309089_49	UniRef90	UniRef90_A0A0A7I2H6	Phage recombination protein Bet	NA
UHGV-0309089_49	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0309089_49	Pfam	PF03837	RecT family	RecT
UHGV-0309089_49	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0309089_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0309089_49	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0309089_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0309089_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0309089_51	UniRef90	UniRef90_R6NTI6	Single-stranded DNA-binding protein	NA
UHGV-0309089_51	eggNOG-mapper	1680.BADO_1267	Single-strand binding protein family	NA
UHGV-0309089_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0309089_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0309089_51	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0309089_52	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0309089_52	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0309089_52	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0309089_52	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0309089_54	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0309089_54	eggNOG-mapper	1437610.BREU_1410	NA	NA
UHGV-0309089_55	eggNOG-mapper	1394176.AWUO01000014_gene674	NA	NA
UHGV-0309089_56	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0309089_56	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-0309089_56	eggNOG-mapper	1688.BCUN_0417	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0309089_56	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0309089_56	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-0309089_57	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0309089_57	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0309089_57	UniRef90	UniRef90_R6P7Q1	dUTPase domain-containing protein	NA
UHGV-0309089_57	eggNOG-mapper	10506.DUT_PBCV1	dUTPase	NA
UHGV-0309089_57	Pfam	PF00692	dUTPase	dUTPase
UHGV-0309089_57	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0309089_57	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0309089_60	PHROG	phrog_236	nucleotide kinase	other
UHGV-0309089_60	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-0309089_60	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-0309089_60	Pfam	PF11753	NA	DUF3310
UHGV-0309089_61	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-0309089_66	PHROG	phrog_21331	NA	unknown function
UHGV-0309089_66	UniRef90	UniRef90_A0A0A7I3Q2	Peptidase	NA
UHGV-0309089_70	Structural annotation	TIGR03655	NA	NA
UHGV-0309089_71	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0309089_71	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0309089_74	UniRef90	UniRef90_A0A2K9BZP4	GTP-binding protein	NA
UHGV-0309089_74	eggNOG-mapper	78346.BRUM_0407	NA	NA