UHGV-0309409

Genome information

vOTU vOTU-072092

Genome length 57,147 bps

CDS count 100

Completeness 99.05% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0309409
vOTU ID	vOTU-072092
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k99_159927_round1256~3805946
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.73
Jumbo phage	No

Genome content
Genome length	57,147 bps
GC content	40.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	87.69%
Average CDS length	504.45 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0309409_1	KOfam	K00953	FLAD1; FAD synthetase [EC:2.7.7.2]	NA
UHGV-0309409_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0309409_1	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0309409_1	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0309409_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0309409_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0309409_1	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0309409_2	PHROG	phrog_3458	NA	unknown function
UHGV-0309409_4	PHROG	phrog_874	NA	unknown function
UHGV-0309409_4	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0309409_4	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0309409_4	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0309409_6	PHROG	phrog_20593	NA	unknown function
UHGV-0309409_8	PHROG	phrog_8684	NA	unknown function
UHGV-0309409_8	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0309409_8	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0309409_8	Pfam	PF09643	YopX protein	YopX
UHGV-0309409_8	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0309409_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0309409_10	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0309409_11	PHROG	phrog_21026	NA	unknown function
UHGV-0309409_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0309409_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0309409_14	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0309409_14	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0309409_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0309409_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0309409_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0309409_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0309409_15	PHROG	phrog_11769	NA	unknown function
UHGV-0309409_15	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0309409_15	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0309409_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0309409_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0309409_15	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0309409_16	PHROG	phrog_19106	NA	unknown function
UHGV-0309409_16	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0309409_16	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0309409_16	Structural annotation	TIGR01453	NA	NA
UHGV-0309409_18	PHROG	phrog_1029	NA	unknown function
UHGV-0309409_18	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0309409_18	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0309409_18	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0309409_19	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0309409_19	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0309409_20	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0309409_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0309409_20	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0309409_20	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0309409_20	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0309409_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0309409_20	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0309409_22	PHROG	phrog_25456	NA	unknown function
UHGV-0309409_23	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0309409_23	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0309409_23	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0309409_23	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0309409_26	PHROG	phrog_2164	NA	unknown function
UHGV-0309409_26	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0309409_28	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0309409_28	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0309409_28	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0309409_28	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0309409_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0309409_28	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0309409_29	PHROG	phrog_26861	NA	unknown function
UHGV-0309409_29	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0309409_29	eggNOG-mapper	1408422.JHYF01000009_gene2023	PFAM single-strand binding protein	NA
UHGV-0309409_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0309409_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0309409_29	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0309409_32	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0309409_32	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0309409_32	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0309409_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0309409_32	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0309409_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0309409_32	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0309409_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0309409_35	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0309409_35	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0309409_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0309409_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0309409_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0309409_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0309409_36	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0309409_36	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0309409_36	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0309409_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0309409_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0309409_36	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0309409_38	Structural annotation	NF040910	NA	NA
UHGV-0309409_39	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0309409_41	PHROG	phrog_17196	kinase	other
UHGV-0309409_41	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0309409_41	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0309409_42	PHROG	phrog_18190	NA	unknown function
UHGV-0309409_42	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0309409_42	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0309409_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0309409_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0309409_43	PHROG	phrog_1194	NA	unknown function
UHGV-0309409_43	Pfam	PF20458	NA	DUF6711
UHGV-0309409_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0309409_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0309409_44	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0309409_44	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0309409_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0309409_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0309409_44	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0309409_45	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0309409_45	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0309409_45	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0309409_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0309409_46	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0309409_46	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0309409_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0309409_46	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0309409_47	PHROG	phrog_14030	NA	unknown function
UHGV-0309409_47	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0309409_47	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0309409_47	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0309409_50	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0309409_50	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0309409_51	Structural annotation	PF05657	NA	NA
UHGV-0309409_52	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0309409_52	AcrCatalog	cluster_24841	NA	NA
UHGV-0309409_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0309409_54	PHROG	phrog_443	holin	lysis
UHGV-0309409_54	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0309409_54	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0309409_54	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0309409_54	Structural annotation	PF16945	NA	NA
UHGV-0309409_55	PHROG	phrog_4105	NA	unknown function
UHGV-0309409_55	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0309409_56	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0309409_57	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0309409_57	Structural annotation	PF21169	NA	NA
UHGV-0309409_58	PHROG	phrog_29	major head protein	head and packaging
UHGV-0309409_58	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0309409_58	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0309409_58	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0309409_58	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0309409_59	PHROG	phrog_909	major head protein	head and packaging
UHGV-0309409_59	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0309409_60	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0309409_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0309409_61	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0309409_61	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0309409_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0309409_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0309409_62	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0309409_62	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0309409_62	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0309409_62	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0309409_62	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0309409_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0309409_63	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0309409_63	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0309409_63	COG	COG5410	NA	NA
UHGV-0309409_63	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0309409_66	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0309409_67	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0309409_69	Structural annotation	PF04466	NA	NA
UHGV-0309409_75	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0309409_77	PHROG	phrog_30343	NA	unknown function
UHGV-0309409_77	UniRef90	UniRef90_A0A417A5J9	N-acetyltransferase	NA
UHGV-0309409_77	eggNOG-mapper	1235802.C823_04677	NA	NA
UHGV-0309409_77	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0309409_78	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0309409_80	PHROG	phrog_31631	NA	unknown function
UHGV-0309409_84	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0309409_87	UniRef90	UniRef90_A0A173UED2	Predicted transcriptional regulator	NA
UHGV-0309409_87	eggNOG-mapper	742733.HMPREF9469_02677	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0309409_87	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0309409_87	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0309409_88	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0309409_88	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0309409_88	eggNOG-mapper	1235793.C809_02221	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0309409_88	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0309409_88	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0309409_88	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0309409_91	PHROG	phrog_1233	NA	unknown function
UHGV-0309409_91	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0309409_91	Structural annotation	PF13058	NA	NA
UHGV-0309409_92	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0309409_93	PHROG	phrog_20016	NA	unknown function
UHGV-0309409_93	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0309409_93	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0309409_93	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0309409_94	PHROG	phrog_16490	NA	unknown function
UHGV-0309409_94	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0309409_95	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0309409_96	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0309409_98	KOfam	K14059	int; integrase	NA
UHGV-0309409_98	PHROG	phrog_1	integrase	integration and excision
UHGV-0309409_98	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0309409_98	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0309409_98	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0309409_98	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0309409_98	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0309409_99	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0309409_99	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0309409_99	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0309409_100	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0309409_100	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0309409_100	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0309409_100	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA