UHGV-0313875

Genome information

vOTU vOTU-032013

Genome length 27,959 bps

CDS count 44

Completeness 50.86% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0313875
vOTU ID	vOTU-032013
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_59869_round347~2869525
BioSample	SAMD00114970
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.29
Jumbo phage	No

Genome content
Genome length	27,959 bps
GC content	40.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.50%
Average CDS length	599.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0313875_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0313875_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0313875_1	UniRef90	UniRef90_UPI0018A8B677	recombinase family protein	NA
UHGV-0313875_1	eggNOG-mapper	457412.RSAG_01189	resolvase	NA
UHGV-0313875_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0313875_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0313875_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0313875_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0313875_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0313875_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0313875_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0313875_3	UniRef90	UniRef90_UPI001D0DD847	helix-turn-helix domain-containing protein	NA
UHGV-0313875_3	eggNOG-mapper	397291.C804_05804	TRANSCRIPTIONal	NA
UHGV-0313875_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0313875_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0313875_3	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0313875_4	UniRef90	UniRef90_UPI0018AA1EEF	helix-turn-helix domain-containing protein	NA
UHGV-0313875_4	eggNOG-mapper	411459.RUMOBE_01024	NA	NA
UHGV-0313875_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0313875_4	Structural annotation	PF12844, TIGR00673, COG3655	NA	NA
UHGV-0313875_5	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0313875_5	UniRef90	UniRef90_D4J8N7	Helix-turn-helix	NA
UHGV-0313875_5	eggNOG-mapper	411459.RUMOBE_01025	sequence-specific DNA binding	NA
UHGV-0313875_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0313875_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0313875_5	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0313875_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0313875_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0313875_10	UniRef90	UniRef90_UPI0018ABB1A4	recombinase RecT	NA
UHGV-0313875_10	eggNOG-mapper	1122947.FR7_2503	Recombinase, phage RecT family	NA
UHGV-0313875_10	Pfam	PF03837	RecT family	RecT
UHGV-0313875_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0313875_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0313875_10	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0313875_11	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0313875_11	UniRef90	UniRef90_UPI0018A9B9C1	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0313875_11	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0313875_11	Pfam	PF12684	NA	DUF3799
UHGV-0313875_11	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0313875_11	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0313875_12	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0313875_12	UniRef90	UniRef90_C4ZCC5	Phage_rep_org_N domain-containing protein	NA
UHGV-0313875_12	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0313875_12	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0313875_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0313875_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0313875_13	UniRef90	UniRef90_UPI0018A8E70C	ATP-binding protein	NA
UHGV-0313875_13	eggNOG-mapper	411459.RUMOBE_01035	NA	NA
UHGV-0313875_13	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0313875_13	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0313875_13	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0313875_13	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0313875_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0313875_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0313875_14	UniRef90	UniRef90_UPI0018ABE03D	helix-turn-helix transcriptional regulator	NA
UHGV-0313875_14	eggNOG-mapper	1321778.HMPREF1982_01190	helix-turn-helix	NA
UHGV-0313875_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0313875_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0313875_14	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0313875_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0313875_15	UniRef90	UniRef90_A0A391P3J9	Endonuclease	NA
UHGV-0313875_15	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0313875_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0313875_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0313875_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0313875_17	PHROG	phrog_5984	NA	unknown function
UHGV-0313875_17	eggNOG-mapper	411459.RUMOBE_01041	NA	NA
UHGV-0313875_17	Structural annotation	PF19561	NA	NA
UHGV-0313875_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0313875_18	UniRef90	UniRef90_I0R7Z9	PF07374 family protein	NA
UHGV-0313875_18	eggNOG-mapper	411459.RUMOBE_01043	NA	NA
UHGV-0313875_18	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0313875_20	eggNOG-mapper	498761.HM1_0635	NA	NA
UHGV-0313875_21	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0313875_21	UniRef90	UniRef90_UPI001C018E19	ParB N-terminal domain-containing protein	NA
UHGV-0313875_21	eggNOG-mapper	761193.Runsl_0328	DNA binding	NA
UHGV-0313875_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0313875_21	Structural annotation	PF02195, MF_02015, TIGR03764	NA	NA
UHGV-0313875_22	KOfam	K19430	epsN; pyridoxal phosphate-dependent aminotransferase EpsN [EC:2.6.1.-]	NA
UHGV-0313875_22	PHROG	phrog_3139	aminotransferase	other
UHGV-0313875_22	UniRef90	UniRef90_UPI0018AA7491	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA
UHGV-0313875_22	eggNOG-mapper	1414720.CBYM010000011_gene2626	Belongs to the DegT DnrJ EryC1 family	NA
UHGV-0313875_22	Pfam	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family	DegT_DnrJ_EryC1
UHGV-0313875_22	COG	COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA
UHGV-0313875_22	Structural annotation	PF01041, MF_01167, TIGR04181, COG0399	NA	NA
UHGV-0313875_23	KOfam	K15894	pseB, wbjB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]	NA
UHGV-0313875_23	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0313875_23	UniRef90	UniRef90_UPI0018AC44D0	SDR family NAD(P)-dependent oxidoreductase	NA
UHGV-0313875_23	eggNOG-mapper	441768.ACL_1045	Polysaccharide biosynthesis protein C-terminal	NA
UHGV-0313875_23	Pfam	PF02719	Polysaccharide biosynthesis protein	Polysacc_synt_2
UHGV-0313875_23	Pfam	PF08485	Polysaccharide biosynthesis protein C-terminal	Polysacc_syn_2C
UHGV-0313875_23	COG	COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	NA
UHGV-0313875_23	Structural annotation	PF02719, MF_00955, TIGR04130, COG1086	NA	NA
UHGV-0313875_24	Structural annotation	PF20691, MF_00316, TIGR04017, COG1216	NA	NA
UHGV-0313875_25	UniRef90	UniRef90_UPI0018AA0963	class I SAM-dependent methyltransferase	NA
UHGV-0313875_25	eggNOG-mapper	504487.JCM19302_714	protein-(glutamine-N5) methyltransferase activity	NA
UHGV-0313875_25	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0313875_25	COG	COG2890	Methylase of polypeptide chain release factors	NA
UHGV-0313875_25	Structural annotation	PF10672, MF_03188, NF001786, COG3897	NA	NA
UHGV-0313875_26	PHROG	phrog_16866	NA	unknown function
UHGV-0313875_26	UniRef90	UniRef90_A0A1C5SUF4	Recombination factor protein RarA	NA
UHGV-0313875_26	eggNOG-mapper	927704.SELR_18260	atpase related to the helicase subunit of the holliday junction resolvase	NA
UHGV-0313875_26	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-0313875_27	PHROG	phrog_18237	NA	unknown function
UHGV-0313875_28	PHROG	phrog_2412	NA	unknown function
UHGV-0313875_28	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0313875_28	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0313875_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0313875_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0313875_29	UniRef90	UniRef90_A0A4R3JJ52	PBSX family phage terminase large subunit	NA
UHGV-0313875_29	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0313875_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0313875_29	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0313875_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0313875_30	UniRef90	UniRef90_A0A4R3JHS3	A118 family predicted phage portal protein	NA
UHGV-0313875_30	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0313875_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0313875_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0313875_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0313875_31	UniRef90	UniRef90_A0A4R3JHR3	Minor capsid protein 2	NA
UHGV-0313875_31	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0313875_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0313875_31	COG	COG2369	NA	NA
UHGV-0313875_31	Structural annotation	PF06152	NA	NA
UHGV-0313875_32	PHROG	phrog_1048	NA	unknown function
UHGV-0313875_32	UniRef90	UniRef90_UPI001D084C4A	NA	NA
UHGV-0313875_32	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0313875_32	Pfam	PF11195	NA	DUF2829
UHGV-0313875_32	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0313875_32	Structural annotation	PF11195	NA	NA
UHGV-0313875_33	PHROG	phrog_13199	NA	unknown function
UHGV-0313875_33	eggNOG-mapper	365659.smi_0447	NA	NA
UHGV-0313875_33	Structural annotation	PF14083	NA	NA
UHGV-0313875_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0313875_34	UniRef90	UniRef90_A0A4R3JH97	Minor structural protein GP20	NA
UHGV-0313875_34	eggNOG-mapper	33035.JPJF01000030_gene2293	PFAM Phage minor structural	NA
UHGV-0313875_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0313875_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0313875_35	UniRef90	UniRef90_UPI0018A95C52	capsid protein	NA
UHGV-0313875_35	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0313875_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0313875_36	PHROG	phrog_1378	NA	unknown function
UHGV-0313875_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0313875_38	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0313875_39	PHROG	phrog_3366	NA	unknown function
UHGV-0313875_39	Pfam	PF20536	NA	DUF6751
UHGV-0313875_39	Structural annotation	PF20536	NA	NA
UHGV-0313875_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0313875_40	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0313875_40	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0313875_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0313875_40	Structural annotation	PF11114	NA	NA
UHGV-0313875_41	PHROG	phrog_3266	tail completion	connector
UHGV-0313875_41	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0313875_41	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0313875_41	Structural annotation	PF12691	NA	NA
UHGV-0313875_42	PHROG	phrog_3099	NA	unknown function
UHGV-0313875_42	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0313875_42	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0313875_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0313875_43	PHROG	phrog_4450	NA	unknown function
UHGV-0313875_43	UniRef90	UniRef90_A0A7M2RHR3	AP endonuclease	NA
UHGV-0313875_43	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0313875_43	Pfam	PF20378	NA	DUF6673
UHGV-0313875_43	Structural annotation	PF20378	NA	NA
UHGV-0313875_44	PHROG	phrog_706	NA	unknown function
UHGV-0313875_44	UniRef90	UniRef90_UPI001D05F1D0	bacteriophage Gp15 family protein	NA
UHGV-0313875_44	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0313875_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0313875_44	Structural annotation	PF06854	NA	NA