UHGV-0315904

Genome information

Genome length 27,986 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0315904
vOTU ID	vOTU-050490
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	DRR003639_141_14087_round1256~2445386
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.92
Jumbo phage	No

Genome content
Genome length	27,986 bps
GC content	46.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.69%
Average CDS length	571.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0315904_1	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0315904_1	UniRef90	UniRef90_UPI001EFA6922	conserved phage C-terminal domain-containing protein	NA
UHGV-0315904_1	eggNOG-mapper	396513.SCA_0478	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0315904_1	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0315904_1	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0315904_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0315904_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0315904_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0315904_2	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-0315904_2	eggNOG-mapper	1280694.AUJQ01000001_gene1885	NA	NA
UHGV-0315904_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0315904_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0315904_2	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0315904_3	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0315904_3	UniRef90	UniRef90_A0A0R2RUN6	HTH cro/C1-type domain-containing protein	NA
UHGV-0315904_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0315904_3	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0315904_5	PHROG	phrog_28142	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0315904_5	eggNOG-mapper	1111121.HMPREF1247_0042	NA	NA
UHGV-0315904_7	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0315904_12	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0315904_12	eggNOG-mapper	661087.HMPREF1008_00898	NA	NA
UHGV-0315904_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0315904_13	PHROG	phrog_10250	NA	unknown function
UHGV-0315904_13	UniRef90	UniRef90_A0A7X5DZC8	PBSX family phage terminase large subunit	NA
UHGV-0315904_13	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-0315904_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0315904_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0315904_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0315904_13	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0315904_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0315904_14	UniRef90	UniRef90_A0A345MKB8	Portal protein	NA
UHGV-0315904_14	eggNOG-mapper	665956.HMPREF1032_03069	NA	NA
UHGV-0315904_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0315904_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0315904_15	UniRef90	UniRef90_A0A345MKC2	Minor capsid protein	NA
UHGV-0315904_15	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0315904_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0315904_15	COG	COG2369	NA	NA
UHGV-0315904_15	Structural annotation	PF06152	NA	NA
UHGV-0315904_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0315904_20	UniRef90	UniRef90_A0A7X7VRL6	P22 coat protein - protein 5 domain protein	NA
UHGV-0315904_20	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0315904_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0315904_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0315904_21	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0315904_22	Pfam	PF20536	NA	DUF6751
UHGV-0315904_22	Structural annotation	PF20536	NA	NA
UHGV-0315904_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0315904_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0315904_23	Structural annotation	PF11114	NA	NA
UHGV-0315904_24	PHROG	phrog_3266	tail completion	connector
UHGV-0315904_24	Structural annotation	PF12691	NA	NA
UHGV-0315904_25	PHROG	phrog_3099	NA	unknown function
UHGV-0315904_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0315904_27	PHROG	phrog_706	NA	unknown function
UHGV-0315904_27	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0315904_27	eggNOG-mapper	33035.JPJF01000033_gene2266	COG NOG24969 non supervised orthologous group	NA
UHGV-0315904_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0315904_27	Structural annotation	PF06854	NA	NA
UHGV-0315904_28	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0315904_28	UniRef90	UniRef90_A0A2N5WB43	Phage-related protein	NA
UHGV-0315904_28	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-0315904_28	COG	COG5412	Phage-related protein	NA
UHGV-0315904_28	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0315904_29	PHROG	phrog_5577	minor tail protein	tail
UHGV-0315904_29	UniRef90	UniRef90_A0A087B697	Putative phage protein gp15	NA
UHGV-0315904_29	eggNOG-mapper	1341695.BBOMB_1030	NA	NA
UHGV-0315904_29	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0315904_30	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0315904_30	eggNOG-mapper	1125712.HMPREF1316_2359	NA	NA
UHGV-0315904_30	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0315904_31	PHROG	phrog_1885	minor tail protein	tail
UHGV-0315904_31	eggNOG-mapper	1125712.HMPREF1316_2358	NA	NA
UHGV-0315904_31	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0315904_32	PHROG	phrog_30068	NA	unknown function
UHGV-0315904_32	eggNOG-mapper	521095.Apar_0592	NA	NA
UHGV-0315904_34	PHROG	phrog_297	holin	lysis
UHGV-0315904_34	UniRef90	UniRef90_UPI000838760E	phage holin	NA
UHGV-0315904_34	eggNOG-mapper	1203602.HMPREF1527_01077	Bacteriophage holin	NA
UHGV-0315904_34	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0315904_34	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0315904_34	COG	COG5546	NA	NA
UHGV-0315904_34	Structural annotation	COG5546	NA	NA
UHGV-0315904_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0315904_35	PHROG	phrog_6745	endolysin	lysis
UHGV-0315904_35	UniRef90	UniRef90_A0A0R1K219	Glycoside hydrolase family 25	NA
UHGV-0315904_35	eggNOG-mapper	553184.ATORI0001_0988	lysozyme activity	NA
UHGV-0315904_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0315904_35	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0315904_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0315904_35	Structural annotation	PF01183, PF19127, TIGR04035, COG5263, COG3757	NA	NA
UHGV-0315904_37	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0315904_37	UniRef90	UniRef90_UPI0009F2D04E	ERF family protein	NA
UHGV-0315904_37	eggNOG-mapper	764291.STRUR_2117	ERF superfamily	NA
UHGV-0315904_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0315904_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0315904_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0315904_38	UniRef90	UniRef90_C8WA62	Single-stranded DNA-binding protein	NA
UHGV-0315904_38	eggNOG-mapper	521095.Apar_0570	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0315904_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0315904_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0315904_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0315904_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0315904_38	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0315904_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0315904_40	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0315904_40	UniRef90	UniRef90_A0A8D5ZQ74	Endonuclease	NA
UHGV-0315904_40	eggNOG-mapper	479437.Elen_2598	Endodeoxyribonuclease RusA	NA
UHGV-0315904_40	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0315904_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0315904_40	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0315904_41	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0315904_41	UniRef90	UniRef90_UPI0013EA84CB	PD-(D/E)XK nuclease family protein	NA
UHGV-0315904_41	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-0315904_41	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0315904_41	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0315904_42	PHROG	phrog_3972	NA	unknown function
UHGV-0315904_42	UniRef90	UniRef90_D3H760	Prophage Pi3 protein	NA
UHGV-0315904_42	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-0315904_42	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-0315904_43	Structural annotation	PF02559, TIGR03318, COG1329	NA	NA
UHGV-0315904_45	PHROG	phrog_6969	NA	unknown function
UHGV-0315904_45	UniRef90	UniRef90_A0A843HT15	Winged helix DNA-binding protein	NA
UHGV-0315904_45	eggNOG-mapper	556269.ACDQ01000002_gene1168	DnaD domain protein	NA
UHGV-0315904_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0315904_45	COG	COG3756	NA	NA