UHGV-0317691

Genome information

vOTU vOTU-011946

Genome length 49,502 bps

CDS count 78

Completeness 99.90% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0317691
vOTU ID	vOTU-011946
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR2641303_141_305393_round8-12~1358271
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.43
Jumbo phage	No

Genome content
Genome length	49,502 bps
GC content	59.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	88.15%
Average CDS length	562.23 bps
tRNA count	11
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0317691_1	KOfam	K14059	int; integrase	NA
UHGV-0317691_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0317691_1	UniRef90	UniRef90_UPI001106575D	tyrosine-type recombinase/integrase	NA
UHGV-0317691_1	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-0317691_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0317691_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0317691_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0317691_2	PHROG	phrog_6837	NA	unknown function
UHGV-0317691_2	eggNOG-mapper	1260356.D920_01759	NA	NA
UHGV-0317691_2	Structural annotation	PF02701, TIGR04165	NA	NA
UHGV-0317691_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0317691_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0317691_3	UniRef90	UniRef90_A0A3N0BBP1	HTH cro/C1-type domain-containing protein	NA
UHGV-0317691_3	eggNOG-mapper	742735.HMPREF9467_01754	Helix-turn-helix XRE-family like proteins	NA
UHGV-0317691_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0317691_3	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0317691_4	UniRef90	UniRef90_A0A2V2FRC8	Transcriptional regulator	NA
UHGV-0317691_4	eggNOG-mapper	1282664.H354_06791	Transcriptional regulator	NA
UHGV-0317691_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0317691_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0317691_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0317691_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0317691_7	UniRef90	UniRef90_A0A2K9B8S9	Phage antirepressor protein	NA
UHGV-0317691_7	eggNOG-mapper	78346.BRUM_0415	BRO family, N-terminal domain	NA
UHGV-0317691_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0317691_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0317691_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0317691_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0317691_8	UniRef90	UniRef90_UPI0013A6734E	helix-turn-helix domain-containing protein	NA
UHGV-0317691_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0317691_9	UniRef90	UniRef90_UPI0011061354	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0317691_9	eggNOG-mapper	1504822.CCNO01000013_gene309	crossover junction endodeoxyribonuclease activity	NA
UHGV-0317691_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0317691_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0317691_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0317691_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0317691_10	UniRef90	UniRef90_UPI00110603B3	YqaJ viral recombinase family protein	NA
UHGV-0317691_10	eggNOG-mapper	1504822.CCNO01000015_gene597	YqaJ viral recombinase family	NA
UHGV-0317691_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0317691_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0317691_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0317691_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0317691_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0317691_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0317691_11	UniRef90	UniRef90_UPI0014858083	recombinase RecT	NA
UHGV-0317691_11	eggNOG-mapper	1504822.CCNO01000015_gene598	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0317691_11	Pfam	PF03837	RecT family	RecT
UHGV-0317691_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0317691_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0317691_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0317691_12	UniRef90	UniRef90_A0A7C7DD47	Integration host factor	NA
UHGV-0317691_12	eggNOG-mapper	396014.BF93_07425	Helix-hairpin-helix DNA-binding motif class 1	NA
UHGV-0317691_12	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0317691_12	COG	COG0099	Ribosomal protein S13	NA
UHGV-0317691_12	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0317691_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0317691_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0317691_13	UniRef90	UniRef90_A4EBT9	Single-stranded DNA-binding protein	NA
UHGV-0317691_13	eggNOG-mapper	742722.HMPREF9463_00041	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0317691_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0317691_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0317691_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0317691_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0317691_13	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0317691_15	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0317691_15	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0317691_15	UniRef90	UniRef90_UPI001E3E2DB2	dUTP diphosphatase	NA
UHGV-0317691_15	eggNOG-mapper	397291.C804_00898	dUTPase	NA
UHGV-0317691_15	Pfam	PF00692	dUTPase	dUTPase
UHGV-0317691_15	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0317691_15	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0317691_15	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0317691_16	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0317691_16	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0317691_16	UniRef90	UniRef90_A0A6N9JGK3	RNA-splicing ligase RtcB	NA
UHGV-0317691_16	eggNOG-mapper	479437.Elen_2615	Belongs to the RtcB family	NA
UHGV-0317691_16	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0317691_16	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0317691_16	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0317691_19	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0317691_21	Pfam	PF11753	NA	DUF3310
UHGV-0317691_21	Structural annotation	PF11753	NA	NA
UHGV-0317691_25	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0317691_25	UniRef90	UniRef90_A4E7A2	Restriction alleviation protein, Lar family	NA
UHGV-0317691_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0317691_25	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0317691_25	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0317691_25	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0317691_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0317691_30	Structural annotation	PF14354	NA	NA
UHGV-0317691_31	UniRef90	UniRef90_A0A5K1JEL1	Anti_R_Lar: restriction alleviation protein, Lar family	NA
UHGV-0317691_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0317691_36	PHROG	phrog_21525	NA	unknown function
UHGV-0317691_38	Structural annotation	NF033863	NA	NA
UHGV-0317691_39	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0317691_39	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0317691_39	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0317691_40	Structural annotation	PF14354	NA	NA
UHGV-0317691_41	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0317691_41	UniRef90	UniRef90_UPI001105FF6B	replisome organizer	NA
UHGV-0317691_41	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0317691_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0317691_41	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0317691_42	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0317691_42	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0317691_42	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-0317691_42	eggNOG-mapper	908340.HMPREF9406_3890	DNA replication protein	NA
UHGV-0317691_42	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0317691_42	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0317691_42	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-0317691_44	Structural annotation	PF06530	NA	NA
UHGV-0317691_45	Structural annotation	PF18275	NA	NA
UHGV-0317691_46	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0317691_47	Structural annotation	PF09202	NA	NA
UHGV-0317691_51	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0317691_52	UniRef90	UniRef90_UPI001C98641B	helix-turn-helix domain-containing protein	NA
UHGV-0317691_52	eggNOG-mapper	1121381.JNIV01000234_gene622	NA	NA
UHGV-0317691_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0317691_52	COG	COG3636	NA	NA
UHGV-0317691_52	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0317691_53	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0317691_53	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0317691_53	UniRef90	UniRef90_UPI001BB21D57	recombinase family protein	NA
UHGV-0317691_53	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0317691_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0317691_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0317691_53	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0317691_54	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0317691_54	UniRef90	UniRef90_UPI001106681D	phage terminase large subunit	NA
UHGV-0317691_54	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0317691_54	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0317691_54	COG	COG5410	NA	NA
UHGV-0317691_54	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0317691_55	PHROG	phrog_64	portal protein	head and packaging
UHGV-0317691_55	UniRef90	UniRef90_UPI0011063BFA	phage portal protein	NA
UHGV-0317691_55	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0317691_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0317691_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0317691_56	UniRef90	UniRef90_UPI001C9809E0	NA	NA
UHGV-0317691_56	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0317691_57	PHROG	phrog_247	major head protein	head and packaging
UHGV-0317691_57	UniRef90	UniRef90_UPI0013EB6380	coat protein	NA
UHGV-0317691_57	eggNOG-mapper	1121866.AUGK01000003_gene1431	NA	NA
UHGV-0317691_57	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0317691_58	UniRef90	UniRef90_UPI001107333C	DNA-packaging protein	NA
UHGV-0317691_58	Structural annotation	TIGR01560	NA	NA
UHGV-0317691_59	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0317691_60	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0317691_61	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0317691_62	UniRef90	UniRef90_UPI001106E87B	phage tail protein	NA
UHGV-0317691_62	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0317691_62	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0317691_63	UniRef90	UniRef90_UPI001106B496	NA	NA
UHGV-0317691_63	Pfam	PF16478	NA	DUF5055
UHGV-0317691_63	Structural annotation	PF16478	NA	NA
UHGV-0317691_65	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0317691_65	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0317691_65	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0317691_66	PHROG	phrog_1194	NA	unknown function
UHGV-0317691_66	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0317691_66	Pfam	PF20458	NA	DUF6711
UHGV-0317691_66	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0317691_67	PHROG	phrog_6616	tail protein	tail
UHGV-0317691_67	UniRef90	UniRef90_A0A1C5RGI0	Peptidase S74 domain-containing protein	NA
UHGV-0317691_67	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0317691_67	COG	COG4926	Phage-related protein	NA
UHGV-0317691_67	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0317691_68	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0317691_69	UniRef90	UniRef90_A0A374VGG6	NA	NA
UHGV-0317691_69	eggNOG-mapper	742722.HMPREF9463_00259	NA	NA
UHGV-0317691_69	Pfam	PF19789	NA	DUF6273
UHGV-0317691_69	Structural annotation	PF19789	NA	NA
UHGV-0317691_70	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0317691_70	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0317691_71	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0317691_71	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0317691_71	UniRef90	UniRef90_UPI0018F23E0A	RNA-directed DNA polymerase	NA
UHGV-0317691_71	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0317691_71	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0317691_71	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0317691_71	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0317691_71	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0317691_72	eggNOG-mapper	742722.HMPREF9463_00263	NA	NA
UHGV-0317691_73	PHROG	phrog_134	NA	unknown function
UHGV-0317691_73	UniRef90	UniRef90_A0A6N9JIP8	XkdX family protein	NA
UHGV-0317691_73	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0317691_73	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0317691_73	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0317691_75	PHROG	phrog_962	holin	lysis
UHGV-0317691_75	UniRef90	UniRef90_A0A415UWD0	Phage holin	NA
UHGV-0317691_75	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0317691_75	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0317691_75	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0317691_75	COG	COG5546	NA	NA
UHGV-0317691_75	Structural annotation	COG5546	NA	NA
UHGV-0317691_76	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0317691_76	PHROG	phrog_3393	endolysin	lysis
UHGV-0317691_76	UniRef90	UniRef90_A0A5K1J905	Bifunctional autolysin	NA
UHGV-0317691_76	eggNOG-mapper	51369.Q9MCC8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0317691_76	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0317691_76	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA