UHGV-0317749

Genome information

vOTU vOTU-032047

Genome length 34,432 bps

CDS count 54

Completeness 58.42% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0317749
vOTU ID	vOTU-032047
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_20817_round1256~329577
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.21
Jumbo phage	No

Genome content
Genome length	34,432 bps
GC content	39.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.28%
Average CDS length	586.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0317749_1	PHROG	phrog_28328	NA	unknown function
UHGV-0317749_4	PHROG	phrog_872	NA	unknown function
UHGV-0317749_4	UniRef90	UniRef90_UPI001EE041E7	NA	NA
UHGV-0317749_4	eggNOG-mapper	688245.CtCNB1_2652	NA	NA
UHGV-0317749_4	Pfam	PF11195	NA	DUF2829
UHGV-0317749_4	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0317749_4	Structural annotation	PF11195	NA	NA
UHGV-0317749_8	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0317749_8	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0317749_8	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0317749_8	COG	COG5410	NA	NA
UHGV-0317749_8	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0317749_9	PHROG	phrog_9529	NA	unknown function
UHGV-0317749_9	UniRef90	UniRef90_UPI000836A084	NA	NA
UHGV-0317749_9	eggNOG-mapper	202752.JL53_03720	NA	NA
UHGV-0317749_9	Pfam	PF04480	NA	DUF559
UHGV-0317749_9	COG	COG2852	Very-short-patch-repair endonuclease	NA
UHGV-0317749_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0317749_10	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0317749_10	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0317749_10	Pfam	PF07374	NA	DUF1492
UHGV-0317749_10	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0317749_10	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0317749_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0317749_11	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0317749_11	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0317749_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0317749_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0317749_12	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0317749_12	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0317749_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0317749_12	COG	COG2369	NA	NA
UHGV-0317749_12	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0317749_13	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0317749_14	PHROG	phrog_909	major head protein	head and packaging
UHGV-0317749_14	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0317749_15	PHROG	phrog_29	major head protein	head and packaging
UHGV-0317749_15	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0317749_15	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0317749_15	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0317749_15	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0317749_16	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0317749_16	Structural annotation	PF21169	NA	NA
UHGV-0317749_17	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0317749_18	PHROG	phrog_4105	NA	unknown function
UHGV-0317749_18	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0317749_19	PHROG	phrog_1129	holin	lysis
UHGV-0317749_19	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0317749_19	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0317749_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0317749_19	Structural annotation	PF06946	NA	NA
UHGV-0317749_20	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0317749_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0317749_21	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0317749_21	AcrCatalog	cluster_24841	NA	NA
UHGV-0317749_22	Structural annotation	PF05657	NA	NA
UHGV-0317749_23	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0317749_23	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0317749_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0317749_26	PHROG	phrog_291	endolysin	lysis
UHGV-0317749_26	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0317749_26	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0317749_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0317749_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0317749_26	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0317749_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0317749_27	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0317749_27	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0317749_27	COG	COG1511	NA	NA
UHGV-0317749_28	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0317749_28	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0317749_28	eggNOG-mapper	1380384.JADN01000003_gene632	Intron encoded nuclease repeat motif	NA
UHGV-0317749_28	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0317749_28	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0317749_28	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0317749_28	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0317749_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0317749_29	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0317749_29	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0317749_29	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0317749_30	PHROG	phrog_1194	NA	unknown function
UHGV-0317749_30	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0317749_30	Pfam	PF20458	NA	DUF6711
UHGV-0317749_30	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0317749_31	PHROG	phrog_6616	tail protein	tail
UHGV-0317749_31	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0317749_31	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0317749_31	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0317749_31	Structural annotation	PF05113, PF20010, NF033848, COG3500	NA	NA
UHGV-0317749_32	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0317749_32	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0317749_33	PHROG	phrog_5302	tail protein	tail
UHGV-0317749_33	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0317749_33	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-0317749_33	Structural annotation	COG1262	NA	NA
UHGV-0317749_34	PHROG	phrog_20201	NA	unknown function
UHGV-0317749_36	PHROG	phrog_3845	NA	unknown function
UHGV-0317749_36	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0317749_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0317749_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0317749_37	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0317749_37	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0317749_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0317749_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0317749_37	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0317749_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0317749_38	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0317749_38	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0317749_38	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0317749_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0317749_40	COG	COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	NA
UHGV-0317749_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0317749_41	UniRef90	UniRef90_UPI00189C937A	Bro-N domain-containing protein	NA
UHGV-0317749_41	eggNOG-mapper	1449343.JQLQ01000002_gene1556	BRO family, N-terminal domain	NA
UHGV-0317749_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0317749_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0317749_41	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0317749_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0317749_42	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0317749_42	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0317749_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0317749_42	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0317749_42	Structural annotation	PF10552	NA	NA
UHGV-0317749_44	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0317749_44	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0317749_46	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0317749_46	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0317749_46	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0317749_46	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0317749_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0317749_46	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0317749_48	PHROG	phrog_2164	NA	unknown function
UHGV-0317749_51	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0317749_51	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0317749_51	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0317749_51	Pfam	PF03837	RecT family	RecT
UHGV-0317749_51	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0317749_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0317749_51	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0317749_52	PHROG	phrog_25456	NA	unknown function
UHGV-0317749_53	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0317749_53	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0317749_53	eggNOG-mapper	1327985.S0A061_9CAUD	NA	NA
UHGV-0317749_53	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0317749_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0317749_54	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-0317749_54	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0317749_54	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0317749_54	dbAPIS	APIS058	NA	NA
UHGV-0317749_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA