UHGV-0317803

Genome information

Genome length 27,946 bps

CDS count 38

Completeness 68.17% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0317803
vOTU ID	vOTU-018148
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_15005_round13~5791867
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.46
Jumbo phage	No

Genome content
Genome length	27,946 bps
GC content	42.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.85%
Average CDS length	692.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0317803_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0317803_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0317803_1	UniRef90	UniRef90_UPI001C23B455	DNA cytosine methyltransferase	NA
UHGV-0317803_1	eggNOG-mapper	1027396.LMOSA_9370	C-5 cytosine-specific DNA methylase	NA
UHGV-0317803_1	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0317803_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0317803_1	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0317803_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0317803_1	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0317803_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0317803_2	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0317803_2	UniRef90	UniRef90_A0A223MJU4	Cytosine-specific methyltransferase	NA
UHGV-0317803_2	eggNOG-mapper	397290.C810_00394	C-5 cytosine-specific DNA methylase	NA
UHGV-0317803_2	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0317803_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0317803_2	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0317803_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0317803_2	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0317803_4	PHROG	phrog_3032	NA	unknown function
UHGV-0317803_4	Structural annotation	PF18358	NA	NA
UHGV-0317803_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0317803_5	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0317803_5	UniRef90	UniRef90_G1VS51	Methyltransferase	NA
UHGV-0317803_5	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0317803_5	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0317803_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0317803_5	COG	COG0863	DNA modification methylase	NA
UHGV-0317803_5	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0317803_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0317803_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0317803_7	UniRef90	UniRef90_A0A099I4V0	Single-stranded DNA-binding protein	NA
UHGV-0317803_7	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0317803_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0317803_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0317803_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0317803_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0317803_7	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0317803_8	PHROG	phrog_4400	NA	unknown function
UHGV-0317803_8	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0317803_8	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0317803_10	PHROG	phrog_2776	NA	unknown function
UHGV-0317803_10	eggNOG-mapper	697329.Rumal_3412	NA	NA
UHGV-0317803_10	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0317803_12	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0317803_12	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0317803_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0317803_15	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0317803_15	UniRef90	UniRef90_UPI001F065150	terminase small subunit	NA
UHGV-0317803_15	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0317803_15	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0317803_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0317803_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0317803_15	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0317803_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0317803_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0317803_16	UniRef90	UniRef90_U5F7S3	PBSX family phage terminase, large subunit	NA
UHGV-0317803_16	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0317803_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0317803_16	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0317803_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0317803_17	UniRef90	UniRef90_A0A1C6JYD4	Phage portal protein, putative, A118 family	NA
UHGV-0317803_17	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0317803_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0317803_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0317803_18	UniRef90	UniRef90_A0A898FSD4	Capsid protein	NA
UHGV-0317803_18	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-0317803_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0317803_18	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0317803_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0317803_21	eggNOG-mapper	552396.HMPREF0863_01634	NA	NA
UHGV-0317803_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0317803_22	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-0317803_22	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0317803_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0317803_23	PHROG	phrog_1378	NA	unknown function
UHGV-0317803_23	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0317803_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0317803_24	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0317803_25	PHROG	phrog_8710	NA	unknown function
UHGV-0317803_25	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-0317803_25	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0317803_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0317803_26	UniRef90	UniRef90_UPI000246D598	minor capsid protein	NA
UHGV-0317803_26	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-0317803_27	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0317803_27	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-0317803_27	eggNOG-mapper	552396.HMPREF0863_01640	NA	NA
UHGV-0317803_27	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0317803_27	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0317803_28	PHROG	phrog_820	major tail protein	tail
UHGV-0317803_28	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-0317803_28	COG	COG5492	NA	NA
UHGV-0317803_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0317803_29	PHROG	phrog_8300	NA	unknown function
UHGV-0317803_29	eggNOG-mapper	1232449.BAHV02000018_gene1519	NA	NA
UHGV-0317803_29	Structural annotation	PF06896	NA	NA
UHGV-0317803_30	PHROG	phrog_8355	NA	unknown function
UHGV-0317803_30	UniRef90	UniRef90_A0A4R3TDU8	Bacteriophage Gp15 protein	NA
UHGV-0317803_30	eggNOG-mapper	552396.HMPREF0863_01643	NA	NA
UHGV-0317803_31	PHROG	phrog_37487	NA	unknown function
UHGV-0317803_31	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-0317803_31	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-0317803_31	COG	COG1511	NA	NA
UHGV-0317803_32	PHROG	phrog_1194	NA	unknown function
UHGV-0317803_32	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-0317803_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0317803_33	PHROG	phrog_2566	NA	unknown function
UHGV-0317803_33	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0317803_34	PHROG	phrog_1401	NA	unknown function
UHGV-0317803_34	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-0317803_34	Structural annotation	PF07761	NA	NA
UHGV-0317803_35	PHROG	phrog_16267	NA	unknown function
UHGV-0317803_35	UniRef90	UniRef90_G1VS14	Peptidase S74 domain-containing protein	NA
UHGV-0317803_35	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0317803_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0317803_35	COG	COG4926	Phage-related protein	NA
UHGV-0317803_35	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0317803_37	PHROG	phrog_4105	NA	unknown function
UHGV-0317803_37	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0317803_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0317803_38	PHROG	phrog_2742	endolysin	lysis
UHGV-0317803_38	UniRef90	UniRef90_H1BAK9	MurNAc-LAA domain-containing protein	NA
UHGV-0317803_38	eggNOG-mapper	908340.HMPREF9406_0809	pathogenesis	NA
UHGV-0317803_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0317803_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA