UHGV-0318070

Genome information

vOTU vOTU-020511

Genome length 28,986 bps

CDS count 46

Completeness 69.54% (medium-quality)

geNomad score 0.9651

Prediction confidence Confident

Genome information
Genome ID	UHGV-0318070
vOTU ID	vOTU-020511
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	DRR171559_141_216446_round13~7534329
BioSample	SAMN06165232
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9651
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.15
Jumbo phage	No

Genome content
Genome length	28,986 bps
GC content	45.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	85.65%
Average CDS length	543.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0318070_3	UniRef90	UniRef90_A0A7X7I585	Class I SAM-dependent methyltransferase	NA
UHGV-0318070_3	eggNOG-mapper	742740.HMPREF9474_04453	Nodulation protein S (NodS)	NA
UHGV-0318070_3	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0318070_3	COG	COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	NA
UHGV-0318070_4	KOfam	K14059	int; integrase	NA
UHGV-0318070_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0318070_4	UniRef90	UniRef90_R9L9C7	Tyr recombinase domain-containing protein	NA
UHGV-0318070_4	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0318070_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0318070_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0318070_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0318070_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0318070_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0318070_5	UniRef90	UniRef90_UPI00164AA6A6	helix-turn-helix domain-containing protein	NA
UHGV-0318070_5	eggNOG-mapper	658086.HMPREF0994_05855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0318070_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0318070_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0318070_6	UniRef90	UniRef90_UPI00164BB460	helix-turn-helix transcriptional regulator	NA
UHGV-0318070_6	eggNOG-mapper	1226325.HMPREF1548_06160	NA	NA
UHGV-0318070_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0318070_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0318070_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0318070_8	UniRef90	UniRef90_UPI0013795361	helix-turn-helix domain-containing protein	NA
UHGV-0318070_8	eggNOG-mapper	370438.PTH_0164	Helix-turn-helix XRE-family like proteins	NA
UHGV-0318070_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0318070_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0318070_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0318070_8	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0318070_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0318070_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0318070_9	UniRef90	UniRef90_A0A1C7GMQ0	Transcriptional regulator	NA
UHGV-0318070_9	eggNOG-mapper	665956.HMPREF1032_03112	sequence-specific DNA binding	NA
UHGV-0318070_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0318070_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0318070_9	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0318070_11	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0318070_11	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0318070_12	UniRef90	UniRef90_A0A120MKI2	Arc domain-containing protein	NA
UHGV-0318070_12	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0318070_12	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0318070_21	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0318070_21	UniRef90	UniRef90_A0A109WCJ8	Methyltransferase	NA
UHGV-0318070_21	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0318070_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0318070_21	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0318070_21	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0318070_23	Structural annotation	PF00412	NA	NA
UHGV-0318070_24	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0318070_24	UniRef90	UniRef90_A0A855A258	YqaJ domain-containing protein	NA
UHGV-0318070_24	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0318070_24	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0318070_24	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0318070_24	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0318070_24	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0318070_25	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0318070_25	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0318070_25	UniRef90	UniRef90_A0A1C6GC95	p33	NA
UHGV-0318070_25	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0318070_25	Pfam	PF03837	RecT family	RecT
UHGV-0318070_25	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0318070_25	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0318070_25	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0318070_26	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0318070_26	UniRef90	UniRef90_A0A3A9CZ06	NA	NA
UHGV-0318070_26	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0318070_26	Pfam	PF19808	NA	DUF6291
UHGV-0318070_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0318070_26	Structural annotation	PF19808	NA	NA
UHGV-0318070_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0318070_27	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0318070_27	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-0318070_27	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0318070_27	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0318070_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0318070_27	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0318070_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0318070_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0318070_28	UniRef90	UniRef90_A0A7Y2PKT8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0318070_28	eggNOG-mapper	1443125.Z962_p0037	Endodeoxyribonuclease RusA	NA
UHGV-0318070_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0318070_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0318070_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0318070_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0318070_33	PHROG	phrog_5063	NA	unknown function
UHGV-0318070_33	UniRef90	UniRef90_A0A7G5MXF6	NA	NA
UHGV-0318070_33	eggNOG-mapper	102129.Lepto7375DRAFT_7256	NA	NA
UHGV-0318070_33	PADLOC	icity0062	Csx16	CRISPR-CAS
UHGV-0318070_33	Pfam	PF08960	STIV B116-like	STIV_B116-like
UHGV-0318070_33	Structural annotation	PF08960	NA	NA
UHGV-0318070_35	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0318070_37	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0318070_37	UniRef90	UniRef90_A0A063YNQ7	Transposase	NA
UHGV-0318070_37	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0318070_37	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0318070_37	Structural annotation	PF07141	NA	NA
UHGV-0318070_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0318070_38	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0318070_38	UniRef90	UniRef90_R5B509	PBSX family phage terminase large subunit	NA
UHGV-0318070_38	eggNOG-mapper	1449126.JQKL01000046_gene2072	NA	NA
UHGV-0318070_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0318070_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0318070_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0318070_39	PHROG	phrog_156	portal protein	head and packaging
UHGV-0318070_39	eggNOG-mapper	1321782.HMPREF1986_00344	NA	NA
UHGV-0318070_39	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0318070_41	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0318070_41	UniRef90	UniRef90_A0A142BVJ7	Putative N4-gp56 family major capsid protein	NA
UHGV-0318070_41	eggNOG-mapper	935837.JAEK01000054_gene1469	NA	NA
UHGV-0318070_41	Pfam	PF13252	NA	DUF4043
UHGV-0318070_41	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0318070_41	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0318070_44	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0318070_44	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0318070_46	Pfam	PF10651	BppU N-terminal domain	BppU_N