UHGV-0319554

Genome information

vOTU vOTU-032066

Genome length 42,744 bps

CDS count 58

Completeness 68.53% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0319554
vOTU ID	vOTU-032066
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_62908_round1256~5446782
BioSample	SAMEA4813972
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	68.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.59
Jumbo phage	No

Genome content
Genome length	42,744 bps
GC content	43.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.99%
Average CDS length	676.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0319554_2	PHROG	phrog_7566	NA	unknown function
UHGV-0319554_2	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0319554_3	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0319554_3	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0319554_3	UniRef90	UniRef90_A0A5C0AT92	Ribonuclease H	NA
UHGV-0319554_3	eggNOG-mapper	264203.ZMO1601	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0319554_3	Pfam	PF00075	RNase H	RNase_H
UHGV-0319554_3	COG	COG0328	Ribonuclease HI	NA
UHGV-0319554_3	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0319554_5	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0319554_5	PHROG	phrog_5696	NA	unknown function
UHGV-0319554_5	UniRef90	UniRef90_A0A8E3SKS1	N-6 DNA methylase	NA
UHGV-0319554_5	eggNOG-mapper	1245471.PCA10_p0930	N-6 DNA Methylase	NA
UHGV-0319554_5	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0319554_5	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0319554_5	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0319554_5	Structural annotation	COG0286	NA	NA
UHGV-0319554_6	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0319554_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0319554_6	UniRef90	UniRef90_A0A3D2TUS5	Integrase	NA
UHGV-0319554_6	eggNOG-mapper	1514668.JOOA01000001_gene378	Belongs to the 'phage' integrase family	NA
UHGV-0319554_6	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0319554_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0319554_6	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0319554_6	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0319554_7	UniRef90	UniRef90_A0A416MN06	Zinc ribbon domain-containing protein	NA
UHGV-0319554_7	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0319554_9	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0319554_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0319554_11	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0319554_11	UniRef90	UniRef90_A0A174BYY3	HNHc domain-containing protein	NA
UHGV-0319554_11	eggNOG-mapper	1235792.C808_03068	HNH endonuclease	NA
UHGV-0319554_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0319554_11	Structural annotation	PF05766	NA	NA
UHGV-0319554_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0319554_12	UniRef90	UniRef90_A0A1E3U7L7	Terminase	NA
UHGV-0319554_12	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0319554_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0319554_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0319554_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0319554_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0319554_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0319554_13	UniRef90	UniRef90_UPI001C0E9FBB	terminase large subunit	NA
UHGV-0319554_13	eggNOG-mapper	97139.C824_05973	Terminase	NA
UHGV-0319554_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0319554_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0319554_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0319554_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0319554_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0319554_14	UniRef90	UniRef90_F7JWF4	HK97 family phage portal protein	NA
UHGV-0319554_14	eggNOG-mapper	1235792.C808_03065	Phage portal protein	NA
UHGV-0319554_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0319554_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0319554_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0319554_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0319554_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0319554_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0319554_15	UniRef90	UniRef90_R9JV23	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0319554_15	eggNOG-mapper	97139.C824_05971	Belongs to the peptidase S14 family	NA
UHGV-0319554_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0319554_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0319554_15	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0319554_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0319554_16	UniRef90	UniRef90_UPI001BBFBC96	Phage major capsid protein	NA
UHGV-0319554_16	eggNOG-mapper	411459.RUMOBE_00935	phage major capsid protein, HK97 family	NA
UHGV-0319554_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0319554_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0319554_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0319554_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0319554_17	UniRef90	UniRef90_A0A7T0D4Q6	Phage gp6-like head-tail connector protein	NA
UHGV-0319554_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0319554_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0319554_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0319554_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0319554_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0319554_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0319554_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0319554_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0319554_19	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0319554_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0319554_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0319554_19	Structural annotation	TIGR01725	NA	NA
UHGV-0319554_20	Structural annotation	PF05657	NA	NA
UHGV-0319554_21	PHROG	phrog_88	major tail protein	tail
UHGV-0319554_21	UniRef90	UniRef90_A0A4Q7PJM9	Phi13 family phage major tail protein	NA
UHGV-0319554_21	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0319554_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0319554_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0319554_23	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0319554_23	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0319554_23	UniRef90	UniRef90_UPI001C01D4D2	phage tail tape measure protein	NA
UHGV-0319554_23	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0319554_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0319554_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0319554_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0319554_23	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0319554_24	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0319554_24	eggNOG-mapper	411468.CLOSCI_00193	NA	NA
UHGV-0319554_24	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0319554_25	PHROG	phrog_3558	tail protein	tail
UHGV-0319554_25	UniRef90	UniRef90_A0A4Q7PKS7	Phage minor structural protein	NA
UHGV-0319554_25	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0319554_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0319554_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0319554_25	COG	COG4926	Phage-related protein	NA
UHGV-0319554_25	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0319554_26	PHROG	phrog_372	tail protein	tail
UHGV-0319554_26	UniRef90	UniRef90_UPI001EE154D9	NA	NA
UHGV-0319554_26	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0319554_26	Pfam	PF05895	NA	DUF859
UHGV-0319554_26	COG	COG4675	Phage tail collar domain	NA
UHGV-0319554_26	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0319554_27	PHROG	phrog_17147	NA	unknown function
UHGV-0319554_27	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0319554_27	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0319554_27	Structural annotation	PF10651, PF21430	NA	NA
UHGV-0319554_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0319554_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0319554_28	UniRef90	UniRef90_A0A416MMY0	Reverse transcriptase domain-containing protein	NA
UHGV-0319554_28	eggNOG-mapper	457412.RSAG_01111	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0319554_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0319554_28	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0319554_29	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0319554_30	PHROG	phrog_1382	NA	unknown function
UHGV-0319554_30	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0319554_30	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0319554_32	PHROG	phrog_199	holin	lysis
UHGV-0319554_32	UniRef90	UniRef90_A0A416MND6	Holin	NA
UHGV-0319554_32	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0319554_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0319554_32	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0319554_32	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0319554_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0319554_33	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0319554_33	PHROG	phrog_1794	amidase	lysis
UHGV-0319554_33	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-0319554_33	eggNOG-mapper	908340.HMPREF9406_2562	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0319554_33	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0319554_33	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0319554_33	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0319554_34	Structural annotation	MF_01302_B	NA	NA
UHGV-0319554_35	AcrCatalog	cluster_11486	NA	NA
UHGV-0319554_36	KOfam	K19117	csd1, cas8c; CRISPR-associated protein Csd1	NA
UHGV-0319554_36	UniRef90	UniRef90_A0A7V8DK57	CRISPR-associated protein	NA
UHGV-0319554_36	eggNOG-mapper	1392493.JIAB01000001_gene2647	CRISPR-associated protein (Cas_Csd1)	NA
UHGV-0319554_36	PADLOC	pfam09709	CAS-I-C; effector_LS	CRISPR-CAS
UHGV-0319554_36	Pfam	PF09709	CRISPR-associated protein (Cas_Csd1)	Cas_Csd1
UHGV-0319554_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0319554_37	UniRef90	UniRef90_UPI001570630B	type I-C CRISPR-associated protein Cas8c/Csd1	NA
UHGV-0319554_38	PHROG	phrog_13890	NA	unknown function
UHGV-0319554_38	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0319554_38	eggNOG-mapper	411468.CLOSCI_01452	NA	NA
UHGV-0319554_38	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0319554_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0319554_41	PHROG	phrog_95	integrase	integration and excision
UHGV-0319554_41	UniRef90	UniRef90_A0A417ANQ9	Recombinase family protein	NA
UHGV-0319554_41	eggNOG-mapper	673832.D2IYS3_9CAUD	Recombinase	NA
UHGV-0319554_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0319554_41	Pfam	PF07508	Recombinase	Recombinase
UHGV-0319554_41	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0319554_41	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0319554_42	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0319554_43	UniRef90	UniRef90_A0A417WXI5	XRE family transcriptional regulator	NA
UHGV-0319554_43	eggNOG-mapper	411470.RUMGNA_02178	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0319554_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0319554_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0319554_44	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0319554_44	UniRef90	UniRef90_U2C4I4	DNA-binding helix-turn-helix protein	NA
UHGV-0319554_44	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0319554_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0319554_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0319554_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0319554_45	UniRef90	UniRef90_UPI001ADD85E5	helix-turn-helix domain-containing protein	NA
UHGV-0319554_45	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-0319554_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0319554_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0319554_45	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0319554_49	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0319554_49	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0319554_49	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0319554_53	eggNOG-mapper	999413.HMPREF1094_04704	NA	NA
UHGV-0319554_54	PHROG	phrog_8470	NA	unknown function
UHGV-0319554_54	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-0319554_54	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0319554_54	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0319554_54	Structural annotation	PF14284	NA	NA
UHGV-0319554_55	PHROG	phrog_15077	NA	unknown function
UHGV-0319554_55	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0319554_55	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0319554_55	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0319554_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0319554_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0319554_56	UniRef90	UniRef90_A0A176U568	Single-stranded DNA-binding protein	NA
UHGV-0319554_56	eggNOG-mapper	742740.HMPREF9474_02547	Single-stranded DNA-binding protein	NA
UHGV-0319554_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0319554_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0319554_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0319554_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0319554_56	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0319554_57	PHROG	phrog_1315	NA	unknown function