UHGV-0320591

Genome information

Genome length 13,745 bps

CDS count 19

Completeness 99.90% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0320591
vOTU ID	vOTU-009320
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR525948_119_3208_round347~3330035
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.99
Jumbo phage	No

Genome content
Genome length	13,745 bps
GC content	48.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	90.96%
Average CDS length	661.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0320591_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0320591_1	UniRef90	UniRef90_A0A7C6U4I5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0320591_1	eggNOG-mapper	1297617.JPJD01000020_gene311	NA	NA
UHGV-0320591_1	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0320591_2	PHROG	phrog_25	head closure Hc1	connector
UHGV-0320591_2	UniRef90	UniRef90_UPI0006894E72	phage head closure protein	NA
UHGV-0320591_2	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-0320591_2	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0320591_2	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0320591_2	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0320591_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0320591_3	UniRef90	UniRef90_UPI00051C14BB	terminase large subunit	NA
UHGV-0320591_3	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0320591_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0320591_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0320591_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0320591_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0320591_4	PHROG	phrog_1066	NA	unknown function
UHGV-0320591_4	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0320591_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0320591_5	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0320591_5	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0320591_5	UniRef90	UniRef90_UPI0018CDBFFC	AAA family ATPase	NA
UHGV-0320591_5	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0320591_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0320591_5	Pfam	PF13671	AAA domain	AAA_33
UHGV-0320591_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0320591_5	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0320591_6	UniRef90	UniRef90_UPI00051C0E87	head-tail connector protein	NA
UHGV-0320591_6	eggNOG-mapper	1089548.KI783301_gene3223	NA	NA
UHGV-0320591_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0320591_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0320591_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0320591_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0320591_7	UniRef90	UniRef90_UPI00051BE786	phage major capsid protein	NA
UHGV-0320591_7	eggNOG-mapper	1297617.JPJD01000009_gene2879	Phage capsid family	NA
UHGV-0320591_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0320591_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0320591_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0320591_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0320591_9	KOfam	K06904	NA	NA
UHGV-0320591_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0320591_9	UniRef90	UniRef90_UPI00051AC213	HK97 family phage prohead protease	NA
UHGV-0320591_9	eggNOG-mapper	1089548.KI783301_gene3225	Caudovirus prohead serine protease	NA
UHGV-0320591_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0320591_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0320591_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0320591_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0320591_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0320591_11	UniRef90	UniRef90_UPI0018CF367A	phage portal protein	NA
UHGV-0320591_11	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-0320591_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0320591_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0320591_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0320591_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0320591_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0320591_12	UniRef90	UniRef90_UPI00051C5A39	HK97 gp10 family phage protein	NA
UHGV-0320591_12	eggNOG-mapper	411470.RUMGNA_02071	NA	NA
UHGV-0320591_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0320591_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0320591_12	Structural annotation	TIGR01725	NA	NA
UHGV-0320591_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0320591_13	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0320591_13	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-0320591_13	Structural annotation	PF21578, TIGR00166, COG5655	NA	NA
UHGV-0320591_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0320591_14	UniRef90	UniRef90_UPI00051B3ECB	helix-turn-helix domain-containing protein	NA
UHGV-0320591_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0320591_14	Structural annotation	PF01381, MF_02017, NF010465, NF006550, COG3655	NA	NA
UHGV-0320591_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0320591_15	UniRef90	UniRef90_G8P8D7	Phage antirepressor protein	NA
UHGV-0320591_15	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0320591_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0320591_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0320591_17	UniRef90	UniRef90_A0A3C1GU72	NA	NA
UHGV-0320591_17	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0320591_17	Pfam	PF05339	NA	DUF739
UHGV-0320591_17	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0320591_17	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0320591_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0320591_18	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0320591_18	UniRef90	UniRef90_A0A1Q6L8D4	HTH cro/C1-type domain-containing protein	NA
UHGV-0320591_18	eggNOG-mapper	1216362.B437_06520	Helix-turn-helix XRE-family like proteins	NA
UHGV-0320591_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0320591_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0320591_19	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0320591_19	PHROG	phrog_95	integrase	integration and excision
UHGV-0320591_19	UniRef90	UniRef90_R5EAU3	Resolvase domain protein	NA
UHGV-0320591_19	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0320591_19	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0320591_19	Pfam	PF07508	Recombinase	Recombinase
UHGV-0320591_19	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0320591_19	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0320591_19	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA