UHGV-0321710

Genome information

vOTU vOTU-032089

Genome length 21,951 bps

CDS count 24

Completeness 54.41% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0321710
vOTU ID	vOTU-032089
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR2608652_141_77453_round347~454434
BioSample	SAMEA4702392
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.98
Jumbo phage	No

Genome content
Genome length	21,951 bps
GC content	40.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	94.36%
Average CDS length	867.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0321710_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0321710_1	UniRef90	UniRef90_A0A7G9W3T6	NA	NA
UHGV-0321710_1	eggNOG-mapper	1027292.HMPREF9372_1273	NA	NA
UHGV-0321710_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0321710_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0321710_3	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0321710_3	UniRef90	UniRef90_A0A348Z931	Terminase small subunit	NA
UHGV-0321710_3	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-0321710_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0321710_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0321710_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0321710_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0321710_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0321710_4	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0321710_4	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0321710_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0321710_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0321710_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0321710_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0321710_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0321710_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0321710_5	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0321710_5	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0321710_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0321710_5	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0321710_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0321710_6	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0321710_6	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0321710_6	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0321710_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0321710_6	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0321710_6	COG	COG2369	NA	NA
UHGV-0321710_6	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0321710_8	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0321710_8	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0321710_8	Pfam	PF14265	NA	DUF4355
UHGV-0321710_8	Structural annotation	PF14265	NA	NA
UHGV-0321710_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0321710_9	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0321710_9	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0321710_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0321710_9	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0321710_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0321710_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0321710_9	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0321710_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0321710_10	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0321710_10	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0321710_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0321710_10	Structural annotation	PF05135	NA	NA
UHGV-0321710_11	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0321710_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0321710_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0321710_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0321710_12	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0321710_12	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0321710_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0321710_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0321710_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0321710_13	PHROG	phrog_78	tail terminator	connector
UHGV-0321710_13	Structural annotation	PF05657	NA	NA
UHGV-0321710_14	PHROG	phrog_88	major tail protein	tail
UHGV-0321710_14	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0321710_14	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0321710_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0321710_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0321710_17	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0321710_17	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0321710_17	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0321710_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0321710_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0321710_17	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0321710_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0321710_18	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-0321710_18	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-0321710_18	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0321710_18	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0321710_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0321710_18	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0321710_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0321710_19	UniRef90	UniRef90_A0A1C6E329	Phage-related protein	NA
UHGV-0321710_19	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0321710_19	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0321710_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0321710_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0321710_19	COG	COG4926	Phage-related protein	NA
UHGV-0321710_19	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0321710_20	eggNOG-mapper	1033744.CAEL01000015_gene50	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0321710_20	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0321710_21	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0321710_21	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0321710_21	UniRef90	UniRef90_A0A1V5QGS4	YcfA-like protein	NA
UHGV-0321710_21	eggNOG-mapper	592031.GCWU000322_00749	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0321710_21	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0321710_21	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0321710_22	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0321710_22	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0321710_22	UniRef90	UniRef90_R9KUT1	HicB-like domain-containing protein	NA
UHGV-0321710_22	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0321710_22	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0321710_22	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0321710_22	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0321710_23	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA