UHGV-0321826

Genome information

vOTU vOTU-061957

Genome length 16,829 bps

CDS count 25

Completeness 99.90% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0321826
vOTU ID	vOTU-061957
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR2641260_141_287128_round8-12~1963922
BioSample	SAMEA4731462
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.14
Jumbo phage	No

Genome content
Genome length	16,829 bps
GC content	49.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	94.15%
Average CDS length	635.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0321826_8	KOfam	K13731	inlB; internalin B	NA
UHGV-0321826_8	PHROG	phrog_670	endolysin	lysis
UHGV-0321826_8	UniRef90	UniRef90_A0A261FUS2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0321826_8	eggNOG-mapper	1120979.ATVB01000037_gene1492	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0321826_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0321826_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0321826_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0321826_9	PHROG	phrog_199	holin	lysis
UHGV-0321826_9	UniRef90	UniRef90_A0A7K3XW11	Holin	NA
UHGV-0321826_9	eggNOG-mapper	1384484.AEQU_1162	Bacteriophage holin family	NA
UHGV-0321826_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0321826_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0321826_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0321826_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0321826_10	UniRef90	UniRef90_UPI000BF7E49A	phage DNA encapsidation protein	NA
UHGV-0321826_10	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0321826_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0321826_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0321826_11	PHROG	phrog_1015	tail protein with lysin activity	tail
UHGV-0321826_11	UniRef90	UniRef90_A0A6G5XZM2	NlpC/P60 domain-containing protein	NA
UHGV-0321826_11	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0321826_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0321826_11	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0321826_12	Structural annotation	PF08931	NA	NA
UHGV-0321826_14	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0321826_14	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0321826_14	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0321826_15	PHROG	phrog_2038	upper collar connector	connector
UHGV-0321826_15	UniRef90	UniRef90_A0A7S5V0G4	Upper collar connector protein	NA
UHGV-0321826_15	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0321826_15	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0321826_15	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0321826_16	PHROG	phrog_2248	tail protein	tail
UHGV-0321826_16	UniRef90	UniRef90_A0A7S5V1W7	Major tail protein	NA
UHGV-0321826_16	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0321826_16	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0321826_16	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0321826_16	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0321826_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0321826_17	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-0321826_17	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0321826_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0321826_19	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0321826_19	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0321826_19	Structural annotation	PF12651, NF041793, COG3905	NA	NA
UHGV-0321826_20	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0321826_20	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0321826_20	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0321826_20	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0321826_20	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0321826_20	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0321826_21	Structural annotation	PF05435	NA	NA
UHGV-0321826_22	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0321826_22	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0321826_22	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0321826_22	Structural annotation	PF17427	NA	NA
UHGV-0321826_23	Structural annotation	PF17548, MF_00273, NF001981	NA	NA