UHGV-0321836

Genome information

vOTU vOTU-032090

Genome length 24,030 bps

CDS count 36

Completeness 61.45% (medium-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0321836
vOTU ID	vOTU-032090
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_3783_round13~5975376
BioSample	SAMN04436657
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.42
Jumbo phage	No

Genome content
Genome length	24,030 bps
GC content	50.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	89.18%
Average CDS length	596.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0321836_1	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0321836_1	UniRef90	UniRef90_A0A377TV74	Phage tail length tape-measure protein 1	NA
UHGV-0321836_1	eggNOG-mapper	911008.GLAD_04140	tape measure protein	NA
UHGV-0321836_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0321836_1	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0321836_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0321836_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0321836_2	PHROG	phrog_5031	NA	unknown function
UHGV-0321836_2	UniRef90	UniRef90_UPI001CA39127	YebO family protein	NA
UHGV-0321836_2	eggNOG-mapper	10742.Q9MCU2_BPHK0	YebO-like protein	NA
UHGV-0321836_2	Pfam	PF13974	YebO-like protein	YebO
UHGV-0321836_3	PHROG	phrog_14766	tail protein	tail
UHGV-0321836_3	UniRef90	UniRef90_UPI000D741DFE	NA	NA
UHGV-0321836_3	eggNOG-mapper	573.JG24_11030	NA	NA
UHGV-0321836_3	Pfam	PF13227	NA	DUF4035
UHGV-0321836_3	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0321836_4	PHROG	phrog_14766	tail protein	tail
UHGV-0321836_4	UniRef90	UniRef90_UPI001C6080A8	phage tail assembly chaperone	NA
UHGV-0321836_4	eggNOG-mapper	571.MC52_01365	tail assembly chaperone	NA
UHGV-0321836_4	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0321836_4	Structural annotation	PF06222	NA	NA
UHGV-0321836_5	PHROG	phrog_158	major tail protein	tail
UHGV-0321836_5	UniRef90	UniRef90_A0A4P1AST2	Ig-like domain-containing protein	NA
UHGV-0321836_5	eggNOG-mapper	573.JG24_11020	NA	NA
UHGV-0321836_5	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0321836_5	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0321836_6	PHROG	phrog_347	tail terminator	connector
UHGV-0321836_6	UniRef90	UniRef90_UPI0012B9FC5B	NA	NA
UHGV-0321836_6	eggNOG-mapper	573.JG24_11015	Structural component (Phage or Prophage Related)	NA
UHGV-0321836_6	Structural annotation	PF11367	NA	NA
UHGV-0321836_7	PHROG	phrog_23409	NA	unknown function
UHGV-0321836_7	UniRef90	UniRef90_UPI0007CBB79D	HK97 gp10 family phage protein	NA
UHGV-0321836_7	eggNOG-mapper	573.JG24_11010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0321836_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0321836_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0321836_7	Structural annotation	TIGR01725	NA	NA
UHGV-0321836_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0321836_8	UniRef90	UniRef90_A0A0J4XS12	Head-tail adaptor protein	NA
UHGV-0321836_8	eggNOG-mapper	573.JG24_11005	head-tail adaptor	NA
UHGV-0321836_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0321836_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0321836_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0321836_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0321836_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0321836_9	UniRef90	UniRef90_A0A163UR53	Phage gp6-like head-tail connector protein	NA
UHGV-0321836_9	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0321836_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0321836_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0321836_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0321836_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0321836_10	UniRef90	UniRef90_A0A133LFJ6	Phage major capsid protein, HK97 family	NA
UHGV-0321836_10	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0321836_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0321836_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0321836_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0321836_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0321836_11	KOfam	K06904	NA	NA
UHGV-0321836_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0321836_11	UniRef90	UniRef90_A0A133LFS7	Phage prohead protease, HK97 family	NA
UHGV-0321836_11	eggNOG-mapper	667121.ET1_08_01070	Prohead protease	NA
UHGV-0321836_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0321836_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0321836_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0321836_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0321836_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0321836_12	UniRef90	UniRef90_A0A7I7A5G0	Portal protein	NA
UHGV-0321836_12	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0321836_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0321836_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0321836_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0321836_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0321836_13	PHROG	phrog_7105	NA	unknown function
UHGV-0321836_13	UniRef90	UniRef90_A0A486H341	Membrane protein	NA
UHGV-0321836_13	eggNOG-mapper	520999.PROVALCAL_02013	NA	NA
UHGV-0321836_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0321836_14	UniRef90	UniRef90_A0A3G2FCW0	Terminase large subunit	NA
UHGV-0321836_14	eggNOG-mapper	741091.Rahaq_1806	terminase	NA
UHGV-0321836_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0321836_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0321836_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0321836_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0321836_15	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0321836_15	UniRef90	UniRef90_A0A377ZT15	Terminase	NA
UHGV-0321836_15	eggNOG-mapper	1410619.SRDD_27410	Phage terminase, small subunit	NA
UHGV-0321836_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0321836_15	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0321836_15	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0321836_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0321836_16	PHROG	phrog_4160	NA	unknown function
UHGV-0321836_16	UniRef90	UniRef90_UPI001E373CDE	HNH endonuclease	NA
UHGV-0321836_16	eggNOG-mapper	469660.A8HP87_9CAUD	endonuclease activity	NA
UHGV-0321836_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0321836_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0321836_17	UniRef90	UniRef90_A0A2I8XR41	HNH endonuclease	NA
UHGV-0321836_17	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0321836_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0321836_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0321836_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0321836_18	KOfam	K04771	degP, htrA; serine protease Do [EC:3.4.21.107]	NA
UHGV-0321836_18	PHROG	phrog_11383	NA	unknown function
UHGV-0321836_18	UniRef90	UniRef90_UPI000669080E	serine protease	NA
UHGV-0321836_18	eggNOG-mapper	1047013.AQSP01000069_gene6	serine-type endopeptidase activity	NA
UHGV-0321836_18	PADLOC	retron_XI	single gene	Retron
UHGV-0321836_18	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0321836_18	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0321836_20	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0321836_20	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0321836_21	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0321836_21	PHROG	phrog_181	endolysin	lysis
UHGV-0321836_21	UniRef90	UniRef90_UPI00192D4C23	glycoside hydrolase family 19 protein	NA
UHGV-0321836_21	eggNOG-mapper	571.MC52_01460	Chitinase class I	NA
UHGV-0321836_21	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0321836_21	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0321836_21	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0321836_22	PHROG	phrog_217	holin	lysis
UHGV-0321836_22	UniRef90	UniRef90_A0A2L0KQV5	Membrane protein	NA
UHGV-0321836_22	eggNOG-mapper	469595.CSAG_00950	Putative 3TM holin, Phage_holin_3	NA
UHGV-0321836_22	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0321836_23	PHROG	phrog_198	holin	lysis
UHGV-0321836_23	UniRef90	UniRef90_A0A0J2A5L5	Membrane protein	NA
UHGV-0321836_23	eggNOG-mapper	754331.AEME01000001_gene4288	Putative phage holin	NA
UHGV-0321836_23	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0321836_23	Structural annotation	PF16931	NA	NA
UHGV-0321836_25	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0321836_25	UniRef90	UniRef90_UPI0005E17057	NA	NA
UHGV-0321836_25	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0321836_25	Pfam	PF06576	NA	DUF1133
UHGV-0321836_25	Structural annotation	PF06576	NA	NA
UHGV-0321836_26	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0321836_26	UniRef90	UniRef90_A0A1X9TPI1	NA	NA
UHGV-0321836_26	eggNOG-mapper	35703.DQ02_24170	NA	NA
UHGV-0321836_26	Pfam	PF06147	NA	DUF968
UHGV-0321836_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0321836_26	Structural annotation	PF06147	NA	NA
UHGV-0321836_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0321836_27	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0321836_27	UniRef90	UniRef90_UPI000D0B150C	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0321836_27	eggNOG-mapper	1166130.H650_06940	Endodeoxyribonuclease RusA	NA
UHGV-0321836_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0321836_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0321836_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0321836_28	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0321836_28	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0321836_28	UniRef90	UniRef90_W9BGJ5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0321836_28	eggNOG-mapper	371042.NG99_23650	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0321836_28	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-0321836_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0321836_28	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0321836_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0321836_28	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0321836_29	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0321836_29	UniRef90	UniRef90_A0A7U7F836	Phg_2220_C domain-containing protein	NA
UHGV-0321836_29	eggNOG-mapper	1399774.JDWH01000016_gene3451	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0321836_29	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0321836_29	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0321836_29	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0321836_30	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0321836_30	eggNOG-mapper	399742.Ent638_2618	NA	NA
UHGV-0321836_30	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0321836_30	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0321836_30	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0321836_31	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0321836_31	UniRef90	UniRef90_A0A7I0E311	Helix-turn-helix domain-containing protein	NA
UHGV-0321836_31	eggNOG-mapper	273526.SMDB11_2626A	sequence-specific DNA binding	NA
UHGV-0321836_31	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0321836_31	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0321836_32	UniRef90	UniRef90_A0A0F6RFF4	Repressor	NA
UHGV-0321836_32	eggNOG-mapper	273526.SMDB11_2627	nucleic acid-templated transcription	NA
UHGV-0321836_33	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0321836_33	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0321836_33	UniRef90	UniRef90_A0A2S0VJW8	Type I site-specific deoxyribonuclease	NA
UHGV-0321836_33	eggNOG-mapper	598467.BrE312_2381	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0321836_33	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0321836_33	COG	COG4748	NA	NA
UHGV-0321836_35	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-0321836_35	PHROG	phrog_724	exonuclease recombination-associated	DNA, RNA and nucleotide metabolism
UHGV-0321836_35	UniRef90	UniRef90_A0A377ZDN7	Recombination-associated protein RdgC	NA
UHGV-0321836_35	eggNOG-mapper	910964.GEAM_4276	Putative exonuclease, RdgC	NA
UHGV-0321836_35	Pfam	PF04381	Putative exonuclease, RdgC	RdgC
UHGV-0321836_35	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-0321836_36	UniRef90	UniRef90_A0A443XAN7	ABC transporter	NA
UHGV-0321836_36	eggNOG-mapper	571.MC52_01640	NA	NA
UHGV-0321836_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA