UHGV-0323349

Genome information

vOTU vOTU-032099

Genome length 24,053 bps

CDS count 41

Completeness 63.93% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0323349
vOTU ID	vOTU-032099
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_7319_round8-12~3889948
BioSample	SAMN04436651
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.85
Jumbo phage	No

Genome content
Genome length	24,053 bps
GC content	52.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.55%
Average CDS length	533.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0323349_1	KOfam	K14059	int; integrase	NA
UHGV-0323349_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0323349_1	UniRef90	UniRef90_S5MR65	Integrase	NA
UHGV-0323349_1	eggNOG-mapper	1197719.A464_2051	NA	NA
UHGV-0323349_1	Pfam	PF12167	Arm DNA-binding domain	Arm-DNA-bind_2
UHGV-0323349_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0323349_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0323349_1	Structural annotation	PF00589, PF12167, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0323349_2	PHROG	phrog_539	excisionase	integration and excision
UHGV-0323349_2	UniRef90	UniRef90_A0A0F1B0P0	Excisionase	NA
UHGV-0323349_2	eggNOG-mapper	716541.ECL_02720	NA	NA
UHGV-0323349_2	Pfam	PF06806	NA	DUF1233
UHGV-0323349_2	Structural annotation	PF06806	NA	NA
UHGV-0323349_3	PHROG	phrog_24826	NA	unknown function
UHGV-0323349_3	eggNOG-mapper	1224318.DT73_00400	NA	NA
UHGV-0323349_3	Structural annotation	PF17345	NA	NA
UHGV-0323349_4	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0323349_4	UniRef90	UniRef90_A0A0K9TFI8	ORF6N domain-containing protein	NA
UHGV-0323349_4	eggNOG-mapper	1197719.A464_2045	ORF6N domain	NA
UHGV-0323349_4	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0323349_4	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0323349_5	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0323349_5	PHROG	phrog_200	lipoprotein	other
UHGV-0323349_5	UniRef90	UniRef90_A0A2U0LHW6	Gp20	NA
UHGV-0323349_5	eggNOG-mapper	103807.Q8W654_9CAUD	SPFH domain / Band 7 family	NA
UHGV-0323349_5	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0323349_5	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0323349_6	PHROG	phrog_1130	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0323349_6	UniRef90	UniRef90_A0A3T7Z3M5	Glycosyltransferase family 4 protein	NA
UHGV-0323349_7	PHROG	phrog_1886	NA	unknown function
UHGV-0323349_7	eggNOG-mapper	716541.ECL_02716	NA	NA
UHGV-0323349_8	PHROG	phrog_1737	NA	unknown function
UHGV-0323349_8	eggNOG-mapper	716541.ECL_02715	NA	NA
UHGV-0323349_8	Structural annotation	PF17345	NA	NA
UHGV-0323349_9	PHROG	phrog_8959	NA	unknown function
UHGV-0323349_9	Structural annotation	TIGR01280	NA	NA
UHGV-0323349_10	PHROG	phrog_6201	NA	unknown function
UHGV-0323349_10	UniRef90	UniRef90_F5RYZ5	S24 family peptidase	NA
UHGV-0323349_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0323349_10	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0323349_10	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0323349_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0323349_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0323349_12	UniRef90	UniRef90_A0A2Z5H0B9	HTH cro/C1-type domain-containing protein	NA
UHGV-0323349_12	eggNOG-mapper	716541.ECL_01301	Peptidase S24-like	NA
UHGV-0323349_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0323349_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0323349_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0323349_12	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0323349_13	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0323349_13	UniRef90	UniRef90_A0A0A0FEN4	HTH cro/C1-type domain-containing protein	NA
UHGV-0323349_13	eggNOG-mapper	1111728.ATYS01000081_gene4333	sequence-specific DNA binding	NA
UHGV-0323349_13	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0323349_13	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0323349_14	PHROG	phrog_4617	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0323349_14	UniRef90	UniRef90_UPI001CF93925	transcriptional regulator	NA
UHGV-0323349_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0323349_15	UniRef90	UniRef90_A0A8F4BHZ8	Helix-turn-helix domain-containing protein	NA
UHGV-0323349_15	eggNOG-mapper	1399774.JDWH01000024_gene4224	Helix-turn-helix domain	NA
UHGV-0323349_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0323349_15	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0323349_15	Structural annotation	PF13730, MF_01909, TIGR01610, COG5529	NA	NA
UHGV-0323349_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0323349_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0323349_16	UniRef90	UniRef90_A0A8B3V4D0	DNA replication protein DnaC	NA
UHGV-0323349_16	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0323349_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0323349_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0323349_16	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0323349_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0323349_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0323349_17	UniRef90	UniRef90_A0A1Z3MTP9	DNA helicase	NA
UHGV-0323349_17	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0323349_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0323349_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0323349_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0323349_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0323349_18	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0323349_18	UniRef90	UniRef90_A0A7V7M992	Antitermination protein	NA
UHGV-0323349_18	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0323349_18	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0323349_18	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0323349_18	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0323349_18	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0323349_19	PHROG	phrog_198	holin	lysis
UHGV-0323349_19	UniRef90	UniRef90_A0A4R6EWX6	Putative phage holin	NA
UHGV-0323349_19	eggNOG-mapper	93220.LV28_12265	Putative phage holin	NA
UHGV-0323349_19	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0323349_19	Structural annotation	PF16931	NA	NA
UHGV-0323349_20	PHROG	phrog_217	holin	lysis
UHGV-0323349_20	UniRef90	UniRef90_A0A4R6EWW1	Putative 3TM holin	NA
UHGV-0323349_20	eggNOG-mapper	393305.YE1814	Putative 3TM holin, Phage_holin_3	NA
UHGV-0323349_20	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0323349_21	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0323349_21	PHROG	phrog_315	endolysin	lysis
UHGV-0323349_21	UniRef90	UniRef90_A0A2J0R5K6	PG_binding_3 domain-containing protein	NA
UHGV-0323349_21	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-0323349_21	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0323349_21	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0323349_21	COG	COG3926	Lysozyme family protein	NA
UHGV-0323349_21	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0323349_22	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0323349_22	eggNOG-mapper	911008.GLAD_00551	NA	NA
UHGV-0323349_24	PHROG	phrog_13555	NA	unknown function
UHGV-0323349_24	UniRef90	UniRef90_UPI00079A8018	NA	NA
UHGV-0323349_24	eggNOG-mapper	1115515.EV102420_11_00250	NA	NA
UHGV-0323349_24	Pfam	PF09327	NA	DUF1983
UHGV-0323349_25	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0323349_25	UniRef90	UniRef90_UPI001BD1E85B	HNH endonuclease	NA
UHGV-0323349_25	eggNOG-mapper	1115515.EV102420_11_00240	HNH nucleases	NA
UHGV-0323349_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0323349_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0323349_26	PHROG	phrog_24041	NA	unknown function
UHGV-0323349_26	UniRef90	UniRef90_UPI00084BD4C8	serine acetyltransferase	NA
UHGV-0323349_26	eggNOG-mapper	1147143.K7P7A6_9CAUD	NA	NA
UHGV-0323349_27	PHROG	phrog_12559	terminase small subunit	head and packaging
UHGV-0323349_27	UniRef90	UniRef90_Q63VV1	Putative exported protein	NA
UHGV-0323349_27	eggNOG-mapper	1115515.EV102420_11_00220	NA	NA
UHGV-0323349_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0323349_28	UniRef90	UniRef90_A0A090V0X1	Putative terminase large subunit	NA
UHGV-0323349_28	eggNOG-mapper	1115515.EV102420_11_00210	Phage Terminase	NA
UHGV-0323349_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0323349_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0323349_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0323349_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0323349_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0323349_29	UniRef90	UniRef90_A0A090V0Q9	Putative portal protein	NA
UHGV-0323349_29	eggNOG-mapper	1115515.EV102420_11_00200	Phage portal protein	NA
UHGV-0323349_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0323349_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0323349_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0323349_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0323349_30	KOfam	K06904	NA	NA
UHGV-0323349_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0323349_30	UniRef90	UniRef90_A0A482II40	Prohead protease	NA
UHGV-0323349_30	eggNOG-mapper	1115515.EV102420_11_00190	Caudovirus prohead serine protease	NA
UHGV-0323349_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0323349_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0323349_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0323349_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0323349_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0323349_31	UniRef90	UniRef90_A0A286S1R4	Major capsid protein	NA
UHGV-0323349_31	eggNOG-mapper	1115515.EV102420_11_00180	capsid protein	NA
UHGV-0323349_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0323349_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0323349_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0323349_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0323349_32	PHROG	phrog_18204	NA	unknown function
UHGV-0323349_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0323349_33	UniRef90	UniRef90_UPI001BA49E6B	head-tail connector protein	NA
UHGV-0323349_33	eggNOG-mapper	1115515.EV102420_11_00160	Phage gp6-like head-tail connector protein	NA
UHGV-0323349_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0323349_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0323349_34	PHROG	phrog_2612	NA	unknown function
UHGV-0323349_34	eggNOG-mapper	10742.Q9MCV3_BPHK0	NA	NA
UHGV-0323349_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0323349_35	UniRef90	UniRef90_UPI000774F679	phage head closure protein	NA
UHGV-0323349_35	eggNOG-mapper	1115515.EV102420_11_00140	head-tail adaptor	NA
UHGV-0323349_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0323349_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0323349_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0323349_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0323349_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0323349_36	UniRef90	UniRef90_UPI00183FDE43	HK97 gp10 family phage protein	NA
UHGV-0323349_36	eggNOG-mapper	1115515.EV102420_11_00130	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0323349_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0323349_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0323349_36	Structural annotation	TIGR01725	NA	NA
UHGV-0323349_37	PHROG	phrog_78	tail terminator	connector
UHGV-0323349_37	UniRef90	UniRef90_UPI0007751F55	NA	NA
UHGV-0323349_37	eggNOG-mapper	1115515.EV102420_11_00120	NA	NA
UHGV-0323349_37	Pfam	PF11367	NA	DUF3168
UHGV-0323349_37	Structural annotation	PF11367	NA	NA
UHGV-0323349_38	PHROG	phrog_158	major tail protein	tail
UHGV-0323349_38	UniRef90	UniRef90_UPI000774E88A	phage tail protein	NA
UHGV-0323349_38	eggNOG-mapper	10742.Q9MCU9_BPHK0	Pfam:Phage_TTP_11	NA
UHGV-0323349_38	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0323349_38	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0323349_39	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0323349_39	UniRef90	UniRef90_K7PGR1	Tail assembly chaperone	NA
UHGV-0323349_39	eggNOG-mapper	10742.Q9MCU8_BPHK0	Pfam:Phage_TAC_13	NA
UHGV-0323349_39	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0323349_40	PHROG	phrog_5297	tail protein	tail
UHGV-0323349_40	UniRef90	UniRef90_A0A345C8T2	Phage tail protein	NA
UHGV-0323349_40	eggNOG-mapper	10742.Q9MCU7_BPHK0	NA	NA
UHGV-0323349_41	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0323349_41	eggNOG-mapper	640513.Entas_3068	lytic transglycosylase activity	NA
UHGV-0323349_41	COG	COG1196	Chromosome segregation ATPase Smc	NA