UHGV-0326184

Genome information

Genome length 18,931 bps

CDS count 20

Completeness 50.55% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0326184
vOTU ID	vOTU-024085
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8133864_141_1853_round1256~705271
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.35
Jumbo phage	No

Genome content
Genome length	18,931 bps
GC content	48.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	96.95%
Average CDS length	922.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0326184_1	PHROG	phrog_435	endolysin	lysis
UHGV-0326184_1	UniRef90	UniRef90_A0A7C7EVC4	MurNAc-LAA domain-containing protein (Fragment)	NA
UHGV-0326184_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0326184_3	PHROG	phrog_297	holin	lysis
UHGV-0326184_3	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0326184_3	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0326184_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0326184_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0326184_3	COG	COG5546	NA	NA
UHGV-0326184_3	Structural annotation	COG5546	NA	NA
UHGV-0326184_4	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0326184_5	PHROG	phrog_19280	NA	unknown function
UHGV-0326184_5	eggNOG-mapper	428125.CLOLEP_02045	NA	NA
UHGV-0326184_5	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0326184_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0326184_6	UniRef90	UniRef90_UPI00073EA371	phage tail protein	NA
UHGV-0326184_6	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0326184_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0326184_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0326184_6	COG	COG4926	Phage-related protein	NA
UHGV-0326184_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0326184_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0326184_7	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0326184_7	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0326184_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0326184_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0326184_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0326184_8	UniRef90	UniRef90_A0A6S6XMJ5	PhageMin_Tail domain-containing protein	NA
UHGV-0326184_8	eggNOG-mapper	720555.BATR1942_09805	minor tail protein	NA
UHGV-0326184_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0326184_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0326184_8	Structural annotation	PF10145, PF05384, TIGR01760, COG5280	NA	NA
UHGV-0326184_10	PHROG	phrog_88	major tail protein	tail
UHGV-0326184_10	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0326184_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0326184_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0326184_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0326184_10	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0326184_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0326184_11	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0326184_11	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-0326184_11	Structural annotation	TIGR01725	NA	NA
UHGV-0326184_12	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0326184_12	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0326184_13	PHROG	phrog_19734	NA	unknown function
UHGV-0326184_13	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0326184_13	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0326184_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0326184_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0326184_14	PHROG	phrog_749	NA	unknown function
UHGV-0326184_14	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0326184_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0326184_15	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0326184_15	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0326184_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0326184_15	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0326184_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0326184_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0326184_15	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0326184_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0326184_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0326184_16	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0326184_16	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0326184_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0326184_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0326184_16	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0326184_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0326184_17	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-0326184_17	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0326184_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0326184_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0326184_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0326184_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0326184_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0326184_19	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0326184_19	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0326184_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0326184_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0326184_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0326184_20	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0326184_20	UniRef90	UniRef90_A0A1E3C4W5	RNA polymerase subunit sigma-70	NA
UHGV-0326184_20	eggNOG-mapper	202752.JL53_00755	Phage terminase, small subunit	NA
UHGV-0326184_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0326184_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA