UHGV-0330617

Genome information

vOTU vOTU-019517

Genome length 42,819 bps

CDS count 68

Completeness 75.26% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0330617
vOTU ID	vOTU-019517
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5106275_141_43782_round347~4789970
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.26
Jumbo phage	No

Genome content
Genome length	42,819 bps
GC content	36.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.11%
Average CDS length	582.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0330617_1	PHROG	phrog_22444	NA	unknown function
UHGV-0330617_1	UniRef90	UniRef90_A0A5S3QIX1	Helix-turn-helix transcriptional regulator	NA
UHGV-0330617_1	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-0330617_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0330617_1	Structural annotation	PF05584, NF000243, COG0640	NA	NA
UHGV-0330617_2	PHROG	phrog_14314	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0330617_2	UniRef90	UniRef90_A0A8D9PGN5	HNH endonuclease	NA
UHGV-0330617_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0330617_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0330617_2	Structural annotation	PF01844	NA	NA
UHGV-0330617_3	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0330617_3	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0330617_4	Structural annotation	PF04466	NA	NA
UHGV-0330617_5	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0330617_10	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0330617_10	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0330617_10	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0330617_10	COG	COG5410	NA	NA
UHGV-0330617_10	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0330617_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0330617_11	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0330617_11	Structural annotation	PF02996	NA	NA
UHGV-0330617_12	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0330617_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0330617_13	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0330617_13	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0330617_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0330617_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0330617_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0330617_15	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0330617_15	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0330617_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0330617_15	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0330617_16	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0330617_16	Structural annotation	PF21169	NA	NA
UHGV-0330617_17	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0330617_18	PHROG	phrog_1863	NA	unknown function
UHGV-0330617_18	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0330617_19	PHROG	phrog_1129	holin	lysis
UHGV-0330617_19	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0330617_19	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0330617_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0330617_19	Structural annotation	PF06946	NA	NA
UHGV-0330617_20	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0330617_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0330617_21	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0330617_21	AcrCatalog	cluster_24841	NA	NA
UHGV-0330617_22	Structural annotation	PF05657	NA	NA
UHGV-0330617_23	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0330617_23	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0330617_24	PHROG	phrog_36112	NA	unknown function
UHGV-0330617_24	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0330617_24	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0330617_24	Structural annotation	PF16478	NA	NA
UHGV-0330617_26	PHROG	phrog_28918	NA	unknown function
UHGV-0330617_26	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0330617_26	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0330617_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0330617_26	Structural annotation	PF20155	NA	NA
UHGV-0330617_27	PHROG	phrog_1204	tail protein	tail
UHGV-0330617_27	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0330617_27	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0330617_27	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-0330617_30	UniRef90	UniRef90_A0A8D9UIC9	Alginate and motility regulator	NA
UHGV-0330617_30	eggNOG-mapper	476272.RUMHYD_01983	NA	NA
UHGV-0330617_30	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0330617_30	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0330617_31	Structural annotation	PF07875	NA	NA
UHGV-0330617_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0330617_32	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-0330617_32	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0330617_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0330617_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0330617_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0330617_32	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0330617_35	PHROG	phrog_1194	NA	unknown function
UHGV-0330617_35	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0330617_35	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0330617_36	Structural annotation	PF07761	NA	NA
UHGV-0330617_37	PHROG	phrog_6616	tail protein	tail
UHGV-0330617_37	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0330617_37	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0330617_37	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0330617_37	COG	COG4926	Phage-related protein	NA
UHGV-0330617_37	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0330617_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0330617_39	PHROG	phrog_6745	endolysin	lysis
UHGV-0330617_39	UniRef90	UniRef90_A0A7U9R8E5	Autolytic lysozyme	NA
UHGV-0330617_39	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0330617_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0330617_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0330617_39	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0330617_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0330617_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0330617_40	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-0330617_40	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0330617_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0330617_40	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0330617_41	UniRef90	UniRef90_UPI001D0090A6	NA	NA
UHGV-0330617_41	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0330617_41	Pfam	PF05339	NA	DUF739
UHGV-0330617_41	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0330617_41	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0330617_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0330617_42	UniRef90	UniRef90_A0A3D5LQU6	Toxin Bro	NA
UHGV-0330617_42	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0330617_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0330617_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0330617_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0330617_42	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0330617_44	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0330617_44	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0330617_44	Structural annotation	PF10552	NA	NA
UHGV-0330617_47	PHROG	phrog_26861	NA	unknown function
UHGV-0330617_47	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0330617_47	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0330617_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0330617_47	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0330617_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0330617_47	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0330617_49	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0330617_49	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0330617_49	UniRef90	UniRef90_R7BHE4	Phage-related protein	NA
UHGV-0330617_49	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0330617_49	Pfam	PF13476	AAA domain	AAA_23
UHGV-0330617_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0330617_49	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0330617_51	PHROG	phrog_4433	NA	unknown function
UHGV-0330617_51	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0330617_51	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0330617_51	Structural annotation	NF007410	NA	NA
UHGV-0330617_52	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0330617_52	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0330617_52	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0330617_52	Pfam	PF03837	RecT family	RecT
UHGV-0330617_52	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0330617_53	PHROG	phrog_25456	NA	unknown function
UHGV-0330617_55	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0330617_55	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0330617_55	UniRef90	UniRef90_UPI001BC4CEB0	MBL fold metallo-hydrolase	NA
UHGV-0330617_55	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0330617_55	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0330617_55	dbAPIS	APIS058	NA	NA
UHGV-0330617_55	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0330617_55	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0330617_56	PHROG	phrog_31463	NA	unknown function
UHGV-0330617_56	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0330617_57	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0330617_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0330617_60	PHROG	phrog_10714	NA	unknown function
UHGV-0330617_60	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0330617_61	PHROG	phrog_20593	NA	unknown function
UHGV-0330617_62	Structural annotation	PF01396	NA	NA
UHGV-0330617_63	PHROG	phrog_98	NA	unknown function
UHGV-0330617_63	UniRef90	UniRef90_A0A3E4YM29	YopX domain-containing protein	NA
UHGV-0330617_63	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0330617_63	Pfam	PF09643	YopX protein	YopX
UHGV-0330617_63	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0330617_63	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0330617_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0330617_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0330617_64	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0330617_64	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0330617_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0330617_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0330617_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0330617_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0330617_64	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0330617_66	PHROG	phrog_19106	NA	unknown function
UHGV-0330617_66	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0330617_66	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0330617_66	Structural annotation	TIGR01453	NA	NA
UHGV-0330617_68	COG	COG0863	DNA modification methylase	NA