UHGV-0338318

Genome information

vOTU vOTU-021992

Genome length 35,094 bps

CDS count 50

Completeness 85.91% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0338318
vOTU ID	vOTU-021992
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_3644_round8-12~1298765
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.63
Jumbo phage	No

Genome content
Genome length	35,094 bps
GC content	38.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.51%
Average CDS length	646.14 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0338318_2	PHROG	phrog_87	metallo-protease	other
UHGV-0338318_2	UniRef90	UniRef90_A0A242D1A2	Peptidase_M78 domain-containing protein	NA
UHGV-0338318_2	eggNOG-mapper	1201292.DR75_1543	IrrE N-terminal-like domain	NA
UHGV-0338318_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0338318_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0338318_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0338318_3	UniRef90	UniRef90_A0A494SLK4	XRE family transcriptional regulator	NA
UHGV-0338318_3	eggNOG-mapper	1201292.DR75_1542	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0338318_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0338318_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0338318_3	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0338318_4	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0338318_4	UniRef90	UniRef90_A0A494SVW3	XRE family transcriptional regulator	NA
UHGV-0338318_4	eggNOG-mapper	1158609.I586_00047	NA	NA
UHGV-0338318_5	PHROG	phrog_904	excisionase	integration and excision
UHGV-0338318_5	UniRef90	UniRef90_A0A4U9YB53	Excisionase	NA
UHGV-0338318_5	eggNOG-mapper	1449343.JQLQ01000002_gene1554	NA	NA
UHGV-0338318_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0338318_6	UniRef90	UniRef90_UPI00132F840B	Rha family transcriptional regulator	NA
UHGV-0338318_6	eggNOG-mapper	1139219.I569_00061	ORF6C domain	NA
UHGV-0338318_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0338318_6	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0338318_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0338318_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0338318_6	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0338318_9	PHROG	phrog_11542	NA	unknown function
UHGV-0338318_9	eggNOG-mapper	768486.EHR_09455	NA	NA
UHGV-0338318_11	PHROG	phrog_31313	NA	unknown function
UHGV-0338318_11	UniRef90	UniRef90_C9A174	Predicted protein	NA
UHGV-0338318_11	eggNOG-mapper	1158604.I591_00507	NA	NA
UHGV-0338318_11	Structural annotation	PF09466	NA	NA
UHGV-0338318_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0338318_12	UniRef90	UniRef90_A0A6N3EMA6	ERF superfamily protein	NA
UHGV-0338318_12	eggNOG-mapper	1462527.CCDM010000010_gene489	ERF superfamily	NA
UHGV-0338318_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0338318_12	Structural annotation	PF04404, TIGR00607, COG5468	NA	NA
UHGV-0338318_13	PHROG	phrog_674	NA	unknown function
UHGV-0338318_13	UniRef90	UniRef90_A0A4Q0D5P6	NA	NA
UHGV-0338318_13	eggNOG-mapper	1139219.I569_00862	NA	NA
UHGV-0338318_13	Pfam	PF07083	NA	DUF1351
UHGV-0338318_13	Structural annotation	PF07083	NA	NA
UHGV-0338318_14	PHROG	phrog_398	NA	unknown function
UHGV-0338318_14	UniRef90	UniRef90_UPI001C8B85D9	putative HNHc nuclease	NA
UHGV-0338318_14	eggNOG-mapper	1139219.I569_00861	Putative HNHc nuclease	NA
UHGV-0338318_14	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0338318_14	Structural annotation	PF16784	NA	NA
UHGV-0338318_15	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0338318_15	UniRef90	UniRef90_UPI001159671E	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0338318_15	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0338318_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0338318_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0338318_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0338318_15	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0338318_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0338318_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0338318_18	UniRef90	UniRef90_A0A4U9YBD8	Tyrosine recombinase XerC subunit	NA
UHGV-0338318_18	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0338318_18	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0338318_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0338318_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0338318_18	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0338318_19	eggNOG-mapper	1158601.I585_01175	NA	NA
UHGV-0338318_20	PHROG	phrog_14652	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0338318_20	UniRef90	UniRef90_UPI001432C215	MazG-like family protein	NA
UHGV-0338318_20	eggNOG-mapper	1384057.CD33_14060	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0338318_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0338318_20	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0338318_20	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0338318_21	PHROG	phrog_5459	NA	unknown function
UHGV-0338318_24	eggNOG-mapper	1300150.EMQU_0781	NA	NA
UHGV-0338318_27	PHROG	phrog_98	NA	unknown function
UHGV-0338318_27	UniRef90	UniRef90_A0A242D2K0	YopX domain-containing protein	NA
UHGV-0338318_27	eggNOG-mapper	1158607.UAU_05168	YopX protein	NA
UHGV-0338318_27	Pfam	PF09643	YopX protein	YopX
UHGV-0338318_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0338318_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0338318_28	PHROG	phrog_1558	NA	unknown function
UHGV-0338318_28	eggNOG-mapper	1139219.I569_01388	NA	NA
UHGV-0338318_28	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0338318_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0338318_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0338318_30	UniRef90	UniRef90_A0A4Q0D5Q5	Terminase	NA
UHGV-0338318_30	eggNOG-mapper	749413.E5DV49_9VIRU	Terminase small subunit	NA
UHGV-0338318_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0338318_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0338318_30	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0338318_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0338318_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0338318_31	UniRef90	UniRef90_A0A4Q0D5V6	PBSX family phage terminase large subunit	NA
UHGV-0338318_31	eggNOG-mapper	1229517.AMFD01000023_gene1320	Terminase-like family	NA
UHGV-0338318_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0338318_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0338318_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0338318_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0338318_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0338318_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0338318_32	UniRef90	UniRef90_D2IZT6	Portal protein	NA
UHGV-0338318_32	eggNOG-mapper	673837.D2IZT6_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0338318_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0338318_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0338318_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0338318_33	PHROG	phrog_419	NA	unknown function
UHGV-0338318_33	UniRef90	UniRef90_A0A7U8FU65	Prophage Lp2 protein 33	NA
UHGV-0338318_33	eggNOG-mapper	565664.EFXG_01161	NA	NA
UHGV-0338318_33	Structural annotation	PF14083	NA	NA
UHGV-0338318_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0338318_34	UniRef90	UniRef90_UPI001432BB51	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0338318_34	eggNOG-mapper	673837.D2IZT8_9CAUD	Phage Mu protein F like protein	NA
UHGV-0338318_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0338318_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0338318_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0338318_35	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0338318_35	UniRef90	UniRef90_A0A4V1JHX6	NA	NA
UHGV-0338318_35	eggNOG-mapper	1158602.I590_00647	NA	NA
UHGV-0338318_35	Pfam	PF14265	NA	DUF4355
UHGV-0338318_35	Structural annotation	PF14265	NA	NA
UHGV-0338318_36	PHROG	phrog_247	major head protein	head and packaging
UHGV-0338318_36	UniRef90	UniRef90_D2IZU0	Coat protein	NA
UHGV-0338318_36	eggNOG-mapper	673837.D2IZU0_9CAUD	viral capsid	NA
UHGV-0338318_36	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0338318_36	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0338318_37	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-0338318_37	UniRef90	UniRef90_UPI00115474A1	phage head-tail connector protein	NA
UHGV-0338318_37	eggNOG-mapper	416870.llmg_0837	NA	NA
UHGV-0338318_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0338318_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0338318_38	PHROG	phrog_2168	NA	unknown function
UHGV-0338318_38	UniRef90	UniRef90_A0A0R1UW44	NA	NA
UHGV-0338318_38	eggNOG-mapper	420890.LCGL_1126	NA	NA
UHGV-0338318_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0338318_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0338318_39	UniRef90	UniRef90_A0A494SVR8	HK97 gp10 family phage protein	NA
UHGV-0338318_39	eggNOG-mapper	1229517.AMFD01000023_gene1311	NA	NA
UHGV-0338318_39	Structural annotation	TIGR01725	NA	NA
UHGV-0338318_40	UniRef90	UniRef90_D7RWJ4	Gp13	NA
UHGV-0338318_40	eggNOG-mapper	416870.llmg_0840	NA	NA
UHGV-0338318_40	Structural annotation	PF05657	NA	NA
UHGV-0338318_41	PHROG	phrog_158	major tail protein	tail
UHGV-0338318_41	UniRef90	UniRef90_A0A494STV0	Phage tail protein	NA
UHGV-0338318_41	eggNOG-mapper	420890.LCGL_1123	Phage tail tube protein, TTP	NA
UHGV-0338318_41	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0338318_42	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0338318_42	UniRef90	UniRef90_UPI001BCED2E3	NA	NA
UHGV-0338318_42	eggNOG-mapper	673837.D2IZU6_9CAUD	NA	NA
UHGV-0338318_42	Pfam	PF19591	NA	DUF6096
UHGV-0338318_42	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-0338318_43	PHROG	phrog_2066	NA	unknown function
UHGV-0338318_43	UniRef90	UniRef90_D7RWJ9	Gp16	NA
UHGV-0338318_43	eggNOG-mapper	673837.D2IZU7_9CAUD	NA	NA
UHGV-0338318_44	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0338318_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0338318_44	UniRef90	UniRef90_A0A242D1G6	SLT domain-containing protein	NA
UHGV-0338318_44	eggNOG-mapper	416870.llmg_0844	domain protein	NA
UHGV-0338318_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0338318_44	COG	COG1511	NA	NA
UHGV-0338318_45	PHROG	phrog_1194	NA	unknown function
UHGV-0338318_45	UniRef90	UniRef90_G0IA27	NA	NA
UHGV-0338318_45	eggNOG-mapper	1123304.AQYA01000037_gene234	NA	NA
UHGV-0338318_45	Pfam	PF20458	NA	DUF6711
UHGV-0338318_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0338318_46	PHROG	phrog_1330	tail protein	tail
UHGV-0338318_46	UniRef90	UniRef90_UPI001D160926	carbohydrate binding domain-containing protein	NA
UHGV-0338318_46	eggNOG-mapper	764562.D7RWK2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0338318_46	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0338318_46	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0338318_46	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0338318_46	Structural annotation	PF05113, PF00629, PF04862, PF01404, NF033848, NF033675, TIGR04362, COG3500, COG4935	NA	NA
UHGV-0338318_47	PHROG	phrog_1401	NA	unknown function
UHGV-0338318_47	UniRef90	UniRef90_A0A494SN65	NA	NA
UHGV-0338318_47	eggNOG-mapper	1139219.I569_00243	NA	NA
UHGV-0338318_47	Pfam	PF07761	NA	DUF1617
UHGV-0338318_47	Structural annotation	PF07761	NA	NA
UHGV-0338318_48	PHROG	phrog_2566	NA	unknown function
UHGV-0338318_48	UniRef90	UniRef90_U2PXN2	Prophage pi2 protein 49	NA
UHGV-0338318_48	eggNOG-mapper	1294142.CINTURNW_1704	NA	NA
UHGV-0338318_49	PHROG	phrog_199	holin	lysis
UHGV-0338318_49	UniRef90	UniRef90_A0A376H549	Holin	NA
UHGV-0338318_49	eggNOG-mapper	1260356.D920_01818	Bacteriophage holin family	NA
UHGV-0338318_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0338318_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0338318_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0338318_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0338318_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0338318_50	PHROG	phrog_9611	endolysin	lysis
UHGV-0338318_50	UniRef90	UniRef90_A0A242D143	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0338318_50	eggNOG-mapper	565653.EGBG_01985	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0338318_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0338318_50	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0338318_50	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA