UHGV-0339560

Genome information

vOTU vOTU-020619

Genome length 35,868 bps

CDS count 49

Completeness 78.09% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0339560
vOTU ID	vOTU-020619
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR935350_119_5632_round1256~5261241
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.86
Jumbo phage	No

Genome content
Genome length	35,868 bps
GC content	41.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.96%
Average CDS length	675.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0339560_3	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0339560_4	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0339560_4	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0339560_4	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0339560_4	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0339560_4	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0339560_4	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0339560_5	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0339560_5	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0339560_5	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0339560_5	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0339560_5	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0339560_5	Pfam	PF13481	AAA domain	AAA_25
UHGV-0339560_5	COG	COG3598	RecA-family ATPase	NA
UHGV-0339560_5	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0339560_6	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0339560_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0339560_6	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0339560_6	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0339560_6	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0339560_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0339560_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0339560_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0339560_6	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0339560_7	PHROG	phrog_2698	NA	unknown function
UHGV-0339560_7	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0339560_7	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0339560_7	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0339560_8	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0339560_8	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0339560_8	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0339560_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-0339560_8	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0339560_10	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0339560_10	PHROG	phrog_1499	NA	unknown function
UHGV-0339560_10	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0339560_10	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0339560_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0339560_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0339560_10	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0339560_11	PHROG	phrog_9576	NA	unknown function
UHGV-0339560_11	UniRef90	UniRef90_R9IFP8	YozE_SAM_like domain-containing protein	NA
UHGV-0339560_11	eggNOG-mapper	689781.AUJX01000031_gene124	NA	NA
UHGV-0339560_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0339560_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0339560_17	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-0339560_17	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-0339560_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0339560_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0339560_18	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0339560_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0339560_18	UniRef90	UniRef90_A0A2N0ULR3	HTH-type transcriptional regulator ImmR	NA
UHGV-0339560_18	eggNOG-mapper	649747.HMPREF0083_01078	Transcriptional regulator	NA
UHGV-0339560_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0339560_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0339560_19	PHROG	phrog_1914	NA	unknown function
UHGV-0339560_19	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-0339560_19	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0339560_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0339560_19	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0339560_19	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0339560_20	KOfam	K14059	int; integrase	NA
UHGV-0339560_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0339560_20	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0339560_20	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0339560_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0339560_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0339560_20	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0339560_21	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0339560_21	PHROG	phrog_1794	amidase	lysis
UHGV-0339560_21	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0339560_21	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0339560_21	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0339560_21	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0339560_21	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0339560_21	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-0339560_22	PHROG	phrog_199	holin	lysis
UHGV-0339560_22	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0339560_22	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0339560_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0339560_22	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0339560_22	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0339560_22	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0339560_24	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0339560_24	Structural annotation	PF01664	NA	NA
UHGV-0339560_25	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0339560_26	PHROG	phrog_1194	NA	unknown function
UHGV-0339560_26	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0339560_26	Pfam	PF20458	NA	DUF6711
UHGV-0339560_26	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0339560_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0339560_27	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0339560_27	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0339560_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0339560_27	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0339560_29	PHROG	phrog_706	NA	unknown function
UHGV-0339560_29	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0339560_29	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0339560_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0339560_29	Structural annotation	PF06854	NA	NA
UHGV-0339560_30	PHROG	phrog_11299	NA	unknown function
UHGV-0339560_30	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0339560_30	Structural annotation	PF10666	NA	NA
UHGV-0339560_31	PHROG	phrog_3099	NA	unknown function
UHGV-0339560_31	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0339560_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0339560_32	PHROG	phrog_3266	tail completion	connector
UHGV-0339560_32	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0339560_32	Structural annotation	PF20765	NA	NA
UHGV-0339560_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0339560_33	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0339560_33	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0339560_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0339560_33	Structural annotation	PF11114	NA	NA
UHGV-0339560_34	PHROG	phrog_3366	NA	unknown function
UHGV-0339560_34	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0339560_34	Pfam	PF20536	NA	DUF6751
UHGV-0339560_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0339560_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0339560_35	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0339560_35	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0339560_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0339560_36	UniRef90	UniRef90_UPI000F53CC4F	N4-gp56 family major capsid protein	NA
UHGV-0339560_36	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0339560_36	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0339560_36	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0339560_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0339560_37	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0339560_37	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0339560_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0339560_38	PHROG	phrog_2616	NA	unknown function
UHGV-0339560_38	Structural annotation	PF01281	NA	NA
UHGV-0339560_39	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0339560_39	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0339560_39	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0339560_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0339560_41	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0339560_41	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0339560_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0339560_41	COG	COG2369	NA	NA
UHGV-0339560_41	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0339560_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0339560_42	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0339560_42	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0339560_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0339560_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0339560_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0339560_43	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0339560_43	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0339560_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0339560_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0339560_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0339560_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0339560_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0339560_44	Structural annotation	TIGR01636	NA	NA
UHGV-0339560_46	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0339560_46	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0339560_46	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0339560_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0339560_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0339560_46	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0339560_49	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA