UHGV-0341652

Genome information

vOTU vOTU-020622

Genome length 18,571 bps

CDS count 31

Completeness 50.92% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0341652
vOTU ID	vOTU-020622
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_7177_round13~5853665
BioSample	SAMN09278419
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.73
Jumbo phage	No

Genome content
Genome length	18,571 bps
GC content	28.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	92.50%
Average CDS length	556.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0341652_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0341652_1	UniRef90	UniRef90_UPI000B0508D1	phage tail protein	NA
UHGV-0341652_1	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0341652_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0341652_1	COG	COG4926	Phage-related protein	NA
UHGV-0341652_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0341652_2	UniRef90	UniRef90_UPI0010562147	phage tail family protein	NA
UHGV-0341652_2	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0341652_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0341652_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0341652_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0341652_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0341652_3	UniRef90	UniRef90_A0A1C6K0I2	Chromosome segregation protein	NA
UHGV-0341652_3	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0341652_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0341652_3	Structural annotation	PF10145, PF05384, TIGR01760, TIGR02559, COG5280	NA	NA
UHGV-0341652_5	Structural annotation	PF11836	NA	NA
UHGV-0341652_6	PHROG	phrog_88	major tail protein	tail
UHGV-0341652_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0341652_7	Structural annotation	PF05657	NA	NA
UHGV-0341652_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0341652_8	UniRef90	UniRef90_A0A1C6K0X6	Phage protein, HK97 gp10 family	NA
UHGV-0341652_8	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-0341652_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0341652_8	Structural annotation	TIGR01725	NA	NA
UHGV-0341652_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0341652_9	UniRef90	UniRef90_UPI0018A9F4AB	phage head closure protein	NA
UHGV-0341652_9	eggNOG-mapper	536233.CLO_1365	Phage head-tail joining protein	NA
UHGV-0341652_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0341652_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0341652_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0341652_10	UniRef90	UniRef90_A0A336Q1Z5	NA	NA
UHGV-0341652_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0341652_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0341652_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0341652_11	UniRef90	UniRef90_A0A174D6L8	Collagen triple helix repeat (20 copies)	NA
UHGV-0341652_11	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0341652_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0341652_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0341652_12	UniRef90	UniRef90_UPI001B38AB72	phage major capsid protein	NA
UHGV-0341652_12	eggNOG-mapper	1151292.QEW_0342	Phage capsid family	NA
UHGV-0341652_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0341652_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0341652_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0341652_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0341652_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0341652_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0341652_13	UniRef90	UniRef90_A0A336Q7S2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0341652_13	eggNOG-mapper	1291050.JAGE01000001_gene2921	Belongs to the peptidase S14 family	NA
UHGV-0341652_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0341652_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0341652_13	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0341652_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0341652_14	UniRef90	UniRef90_A0A6M1WLI0	Phage portal protein	NA
UHGV-0341652_14	eggNOG-mapper	1151292.QEW_0340	Phage portal protein, HK97 family	NA
UHGV-0341652_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0341652_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0341652_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0341652_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0341652_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0341652_15	UniRef90	UniRef90_A0A6M1WMU7	Terminase large subunit	NA
UHGV-0341652_15	eggNOG-mapper	447909.A6M948_9VIRU	Phage Terminase	NA
UHGV-0341652_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0341652_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0341652_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0341652_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0341652_16	UniRef90	UniRef90_A0A8E1RGT2	Terminase	NA
UHGV-0341652_16	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0341652_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0341652_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0341652_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0341652_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0341652_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0341652_17	UniRef90	UniRef90_A0A6M1WM26	HNH endonuclease	NA
UHGV-0341652_17	eggNOG-mapper	1508644.SFBmNL_00838	HNH endonuclease	NA
UHGV-0341652_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0341652_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0341652_17	Structural annotation	PF05766	NA	NA
UHGV-0341652_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0341652_18	PHROG	phrog_216	integrase	integration and excision
UHGV-0341652_18	UniRef90	UniRef90_A0A1F1KZD3	Integrase	NA
UHGV-0341652_18	eggNOG-mapper	1415774.U728_1259	integrase family	NA
UHGV-0341652_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0341652_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0341652_18	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0341652_19	PHROG	phrog_3928	NA	unknown function
UHGV-0341652_19	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0341652_20	UniRef90	UniRef90_UPI0018A8EB18	NA	NA
UHGV-0341652_20	eggNOG-mapper	1414720.CBYM010000040_gene1638	NA	NA
UHGV-0341652_20	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0341652_22	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0341652_22	Structural annotation	PF17457	NA	NA
UHGV-0341652_25	eggNOG-mapper	1414720.CBYM010000040_gene1631	NA	NA
UHGV-0341652_28	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0341652_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0341652_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0341652_30	UniRef90	UniRef90_UPI001A9BD14A	ATP-binding protein	NA
UHGV-0341652_30	eggNOG-mapper	1391647.AVSV01000022_gene2532	PFAM IstB-like ATP binding protein	NA
UHGV-0341652_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0341652_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0341652_30	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0341652_31	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0341652_31	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA