UHGV-0343086

Genome information

vOTU vOTU-012004

Genome length 39,988 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0343086
vOTU ID	vOTU-012004
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR479474_99_79057_round347~3884877
BioSample	SAMEA4813840
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.26
Jumbo phage	No

Genome content
Genome length	39,988 bps
GC content	55.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.07%
Average CDS length	548.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0343086_1	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0343086_1	Structural annotation	TIGR01636	NA	NA
UHGV-0343086_5	Structural annotation	PF04570	NA	NA
UHGV-0343086_6	PHROG	phrog_3136	NA	unknown function
UHGV-0343086_6	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0343086_6	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0343086_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0343086_6	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0343086_7	PHROG	phrog_38832	NA	unknown function
UHGV-0343086_7	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0343086_7	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0343086_10	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0343086_10	UniRef90	UniRef90_A0A315ZVT2	Phage N-6-adenine-methyltransferase	NA
UHGV-0343086_10	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0343086_10	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0343086_10	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0343086_10	Structural annotation	PF05869, TIGR01712, COG2242	NA	NA
UHGV-0343086_11	PHROG	phrog_22740	NA	unknown function
UHGV-0343086_11	UniRef90	UniRef90_H1CC55	Phage N-6-adenine-methyltransferase	NA
UHGV-0343086_11	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0343086_11	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0343086_11	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0343086_12	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0343086_12	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0343086_12	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0343086_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0343086_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0343086_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0343086_15	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0343086_15	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0343086_15	Pfam	PF06356	NA	DUF1064
UHGV-0343086_15	Structural annotation	PF06356	NA	NA
UHGV-0343086_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0343086_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0343086_17	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0343086_17	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0343086_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0343086_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0343086_17	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0343086_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0343086_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0343086_19	UniRef90	UniRef90_A0A1Q6R0X3	Single-stranded DNA-binding protein	NA
UHGV-0343086_19	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-0343086_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0343086_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0343086_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0343086_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0343086_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0343086_20	PHROG	phrog_7566	NA	unknown function
UHGV-0343086_20	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0343086_20	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0343086_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0343086_21	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0343086_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0343086_21	Structural annotation	PF05772	NA	NA
UHGV-0343086_22	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0343086_22	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0343086_22	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0343086_22	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0343086_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0343086_23	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0343086_23	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0343086_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0343086_23	Structural annotation	PF05565	NA	NA
UHGV-0343086_27	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0343086_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0343086_27	UniRef90	UniRef90_A0A096BAN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0343086_27	eggNOG-mapper	1282665.H353_08829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0343086_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0343086_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0343086_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0343086_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0343086_28	UniRef90	UniRef90_Q2RLS1	Transcriptional regulator, XRE family	NA
UHGV-0343086_28	eggNOG-mapper	264732.Moth_0284	Helix-turn-helix XRE-family like proteins	NA
UHGV-0343086_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0343086_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0343086_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0343086_33	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0343086_33	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0343086_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0343086_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0343086_33	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0343086_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0343086_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0343086_34	UniRef90	UniRef90_A0A3A9ED02	Site-specific recombinase	NA
UHGV-0343086_34	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-0343086_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0343086_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0343086_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0343086_34	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0343086_35	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0343086_36	Structural annotation	PF12510	NA	NA
UHGV-0343086_37	PHROG	phrog_20016	NA	unknown function
UHGV-0343086_37	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0343086_37	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0343086_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0343086_38	PHROG	phrog_16490	NA	unknown function
UHGV-0343086_38	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0343086_39	PHROG	phrog_22984	NA	unknown function
UHGV-0343086_40	PHROG	phrog_21718	NA	unknown function
UHGV-0343086_40	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0343086_41	PHROG	phrog_3754	NA	unknown function
UHGV-0343086_41	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0343086_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0343086_43	PHROG	phrog_435	endolysin	lysis
UHGV-0343086_43	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0343086_43	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0343086_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0343086_43	Pfam	PF05036	SPOR domain	SPOR
UHGV-0343086_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0343086_43	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0343086_44	PHROG	phrog_199	holin	lysis
UHGV-0343086_44	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0343086_44	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0343086_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0343086_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0343086_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0343086_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0343086_45	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0343086_45	PHROG	phrog_2234	tail spike protein	tail
UHGV-0343086_45	UniRef90	UniRef90_UPI0019264D81	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0343086_45	eggNOG-mapper	176299.Atu8097	Pectate lyase superfamily protein	NA
UHGV-0343086_45	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0343086_45	COG	COG5434	Polygalacturonase	NA
UHGV-0343086_46	PHROG	phrog_30034	NA	unknown function
UHGV-0343086_46	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0343086_46	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-0343086_46	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0343086_47	Structural annotation	PF10651	NA	NA
UHGV-0343086_48	PHROG	phrog_372	tail protein	tail
UHGV-0343086_48	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0343086_48	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0343086_48	Pfam	PF05895	NA	DUF859
UHGV-0343086_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0343086_48	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0343086_49	PHROG	phrog_3558	tail protein	tail
UHGV-0343086_49	UniRef90	UniRef90_A0A810Q1Y2	Prophage_tail domain-containing protein	NA
UHGV-0343086_49	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0343086_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0343086_49	COG	COG4926	Phage-related protein	NA
UHGV-0343086_49	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0343086_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0343086_50	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0343086_50	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0343086_50	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0343086_51	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0343086_51	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0343086_51	COG	COG1511	NA	NA
UHGV-0343086_51	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0343086_52	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0343086_53	PHROG	phrog_885	major tail protein	tail
UHGV-0343086_53	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0343086_53	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0343086_53	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0343086_54	PHROG	phrog_17405	head protein	head and packaging
UHGV-0343086_54	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0343086_54	Structural annotation	PF11367	NA	NA
UHGV-0343086_55	PHROG	phrog_17977	NA	unknown function
UHGV-0343086_55	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0343086_55	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0343086_57	PHROG	phrog_544	major head protein	head and packaging
UHGV-0343086_57	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0343086_57	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0343086_57	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0343086_58	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0343086_58	Structural annotation	PF06810	NA	NA
UHGV-0343086_59	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0343086_59	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0343086_59	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0343086_59	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0343086_59	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0343086_60	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0343086_60	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0343086_60	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0343086_60	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0343086_60	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0343086_60	COG	COG2369	NA	NA
UHGV-0343086_60	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0343086_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0343086_61	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0343086_61	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0343086_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0343086_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0343086_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0343086_62	PHROG	phrog_10250	NA	unknown function
UHGV-0343086_62	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0343086_62	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0343086_62	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0343086_62	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0343086_62	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0343086_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0343086_62	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0343086_63	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0343086_63	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0343086_63	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0343086_63	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0343086_63	Structural annotation	PF16677	NA	NA