UHGV-0343275

Genome information

Genome length 42,710 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0343275
vOTU ID	vOTU-006482
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_62415_round347~4144635
BioSample	NA
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.76
Jumbo phage	No

Genome content
Genome length	42,710 bps
GC content	59.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.69%
Average CDS length	901.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0343275_1	PHROG	phrog_22978	NA	unknown function
UHGV-0343275_1	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0343275_1	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0343275_1	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0343275_2	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0343275_2	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0343275_2	UniRef90	UniRef90_A0A3B9GQS6	SGNH_hydro domain-containing protein	NA
UHGV-0343275_2	eggNOG-mapper	411463.EUBVEN_01828	lipolytic protein G-D-S-L family	NA
UHGV-0343275_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0343275_2	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0343275_2	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0343275_3	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0343275_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0343275_4	PHROG	phrog_9611	endolysin	lysis
UHGV-0343275_4	UniRef90	UniRef90_A0A3D1VCL7	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	NA
UHGV-0343275_4	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-0343275_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0343275_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0343275_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0343275_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0343275_5	PHROG	phrog_1863	NA	unknown function
UHGV-0343275_5	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0343275_5	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0343275_6	PHROG	phrog_1129	holin	lysis
UHGV-0343275_6	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0343275_6	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0343275_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0343275_6	Structural annotation	PF06946	NA	NA
UHGV-0343275_7	UniRef90	UniRef90_UPI001C020192	Ig-like domain-containing protein	NA
UHGV-0343275_7	eggNOG-mapper	411462.DORLON_01626	Protein conserved in bacteria	NA
UHGV-0343275_7	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0343275_10	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0343275_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0343275_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0343275_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0343275_12	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0343275_12	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0343275_12	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0343275_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0343275_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0343275_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0343275_12	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0343275_14	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0343275_14	UniRef90	UniRef90_A0A1Y4L975	YqaJ domain-containing protein	NA
UHGV-0343275_14	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0343275_14	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0343275_14	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0343275_14	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0343275_14	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0343275_15	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0343275_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0343275_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0343275_16	UniRef90	UniRef90_A0A7X7Z0P1	Recombinase RecT	NA
UHGV-0343275_16	eggNOG-mapper	272626.lin0085	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0343275_16	Pfam	PF03837	RecT family	RecT
UHGV-0343275_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0343275_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0343275_16	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0343275_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0343275_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0343275_17	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-0343275_17	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0343275_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0343275_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0343275_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0343275_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0343275_17	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0343275_18	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0343275_18	UniRef90	UniRef90_A0A1I7FTR4	DnaD and phage-associated domain-containing protein	NA
UHGV-0343275_18	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0343275_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0343275_22	PHROG	phrog_38832	NA	unknown function
UHGV-0343275_22	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0343275_22	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0343275_23	PHROG	phrog_3136	NA	unknown function
UHGV-0343275_23	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0343275_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0343275_23	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0343275_25	PHROG	phrog_924	NA	unknown function
UHGV-0343275_25	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0343275_25	Pfam	PF04448	NA	DUF551
UHGV-0343275_27	PHROG	phrog_474	phosphofructokinase	other
UHGV-0343275_27	UniRef90	UniRef90_G9RWI8	NA	NA
UHGV-0343275_27	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0343275_27	Pfam	PF19905	NA	DUF6378
UHGV-0343275_27	Structural annotation	PF19905	NA	NA
UHGV-0343275_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0343275_28	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0343275_28	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0343275_28	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0343275_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0343275_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0343275_30	PHROG	phrog_6160	NA	unknown function
UHGV-0343275_30	eggNOG-mapper	37105.F8J1D6_9CAUD	NA	NA
UHGV-0343275_31	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0343275_34	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0343275_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0343275_35	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0343275_35	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0343275_35	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0343275_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0343275_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0343275_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0343275_36	PHROG	phrog_156	portal protein	head and packaging
UHGV-0343275_36	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0343275_36	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0343275_37	KOfam	K07584	NA	NA
UHGV-0343275_37	PHROG	phrog_4478	peptidase	other
UHGV-0343275_37	UniRef90	UniRef90_UPI001A8F44BB	ribosomal-processing cysteine protease Prp	NA
UHGV-0343275_37	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-0343275_37	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0343275_37	COG	COG2868	NA	NA
UHGV-0343275_37	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0343275_38	PHROG	phrog_13908	NA	unknown function
UHGV-0343275_38	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0343275_39	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0343275_39	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0343275_39	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0343275_39	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0343275_39	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0343275_40	PHROG	phrog_15239	NA	unknown function
UHGV-0343275_41	PHROG	phrog_12105	NA	unknown function
UHGV-0343275_41	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0343275_42	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0343275_42	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0343275_42	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0343275_44	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0343275_45	PHROG	phrog_22978	NA	unknown function
UHGV-0343275_45	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA