UHGV-0346865

Genome information

Genome length 38,516 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9589

Prediction confidence Confident

Genome information
Genome ID	UHGV-0346865
vOTU ID	vOTU-065191
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_54531_round13~5328582
BioSample	SAMN09278369
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9589
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.34
Jumbo phage	No

Genome content
Genome length	38,516 bps
GC content	27.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	88.15%
Average CDS length	586.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0346865_4	PHROG	phrog_1455	NA	unknown function
UHGV-0346865_4	eggNOG-mapper	1391647.AVSV01000022_gene2538	NA	NA
UHGV-0346865_4	Pfam	PF21793	NA	DUF6877
UHGV-0346865_5	PHROG	phrog_2329	NA	unknown function
UHGV-0346865_5	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0346865_5	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0346865_6	PHROG	phrog_6775	NA	unknown function
UHGV-0346865_6	AcrCatalog	cluster_37489	NA	NA
UHGV-0346865_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0346865_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0346865_9	UniRef90	UniRef90_UPI00189AF047	single-stranded DNA-binding protein	NA
UHGV-0346865_9	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0346865_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0346865_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0346865_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0346865_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0346865_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0346865_15	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0346865_15	UniRef90	UniRef90_UPI001655EF17	ORF6C domain-containing protein	NA
UHGV-0346865_15	eggNOG-mapper	1292035.H476_1035	Phage regulatory protein	NA
UHGV-0346865_15	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0346865_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0346865_15	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0346865_15	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0346865_16	UniRef90	UniRef90_A0A1C5VDZ3	Spo0E like sporulation regulatory protein	NA
UHGV-0346865_16	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0346865_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0346865_18	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0346865_18	eggNOG-mapper	999413.HMPREF1094_02028	NA	NA
UHGV-0346865_18	Structural annotation	PF21578	NA	NA
UHGV-0346865_20	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0346865_20	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0346865_20	UniRef90	UniRef90_UPI0005E377B6	helix-turn-helix transcriptional regulator	NA
UHGV-0346865_20	eggNOG-mapper	1292035.H476_3453	Helix-turn-helix XRE-family like proteins	NA
UHGV-0346865_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0346865_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0346865_20	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0346865_22	eggNOG-mapper	500633.CLOHIR_00350	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0346865_23	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0346865_23	UniRef90	UniRef90_UPI001D0EAE74	ribbon-helix-helix domain-containing protein	NA
UHGV-0346865_23	eggNOG-mapper	748449.Halha_1699	Ribbon-helix-helix domain	NA
UHGV-0346865_23	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0346865_23	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0346865_24	PHROG	phrog_4223	NA	unknown function
UHGV-0346865_24	AcrCatalog	cluster_2615	NA	NA
UHGV-0346865_25	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0346865_25	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0346865_25	UniRef90	UniRef90_A0A1C5VEM7	ALP_N domain-containing protein	NA
UHGV-0346865_25	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0346865_25	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0346865_25	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0346865_27	UniRef90	UniRef90_A0A5P3XKH8	DNA-binding protein	NA
UHGV-0346865_27	eggNOG-mapper	1292035.H476_3612	NA	NA
UHGV-0346865_27	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0346865_28	PHROG	phrog_2329	NA	unknown function
UHGV-0346865_28	UniRef90	UniRef90_UPI001AEB4F95	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0346865_28	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0346865_31	PHROG	phrog_9829	NA	unknown function
UHGV-0346865_33	Structural annotation	PF08005, PF19972	NA	NA
UHGV-0346865_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0346865_35	PHROG	phrog_435	endolysin	lysis
UHGV-0346865_35	UniRef90	UniRef90_A0A1Y4IK94	SPOR domain-containing protein	NA
UHGV-0346865_35	eggNOG-mapper	1408823.AXUS01000024_gene2741	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0346865_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0346865_35	Pfam	PF05036	SPOR domain	SPOR
UHGV-0346865_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0346865_35	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0346865_37	PHROG	phrog_13589	NA	unknown function
UHGV-0346865_37	eggNOG-mapper	913865.DOT_2883	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0346865_37	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0346865_38	PHROG	phrog_16573	NA	unknown function
UHGV-0346865_38	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0346865_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0346865_38	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0346865_39	PHROG	phrog_7043	tail protein	tail
UHGV-0346865_39	UniRef90	UniRef90_UPI00189703DD	phage tail protein	NA
UHGV-0346865_39	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0346865_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0346865_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0346865_39	COG	COG4926	Phage-related protein	NA
UHGV-0346865_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0346865_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0346865_40	UniRef90	UniRef90_UPI0018CF8817	phage tail family protein	NA
UHGV-0346865_40	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0346865_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0346865_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0346865_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0346865_41	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0346865_41	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0346865_41	UniRef90	UniRef90_UPI0018AC3B12	phage tail tape measure protein	NA
UHGV-0346865_41	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0346865_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0346865_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0346865_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0346865_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0346865_42	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0346865_42	Structural annotation	PF11836	NA	NA
UHGV-0346865_43	PHROG	phrog_88	major tail protein	tail
UHGV-0346865_43	UniRef90	UniRef90_A0A6M1WMM9	Phage tail protein	NA
UHGV-0346865_43	eggNOG-mapper	1111121.HMPREF1247_0016	phage major tail protein, phi13 family	NA
UHGV-0346865_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0346865_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0346865_44	PHROG	phrog_78	tail terminator	connector
UHGV-0346865_44	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0346865_44	Structural annotation	PF05657	NA	NA
UHGV-0346865_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0346865_45	eggNOG-mapper	632245.CLP_2691	NA	NA
UHGV-0346865_45	Structural annotation	TIGR01725	NA	NA
UHGV-0346865_46	UniRef90	UniRef90_UPI000A176131	phage head closure protein	NA
UHGV-0346865_46	eggNOG-mapper	536233.CLO_1365	Phage head-tail joining protein	NA
UHGV-0346865_46	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0346865_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0346865_47	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0346865_47	UniRef90	UniRef90_UPI00164B66EB	head-tail connector protein	NA
UHGV-0346865_47	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0346865_47	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0346865_47	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0346865_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0346865_48	UniRef90	UniRef90_UPI00100BC8BF	phage major capsid protein	NA
UHGV-0346865_48	eggNOG-mapper	1196031.ALEG01000039_gene1816	Phage capsid family	NA
UHGV-0346865_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0346865_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0346865_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0346865_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0346865_49	KOfam	K06904	NA	NA
UHGV-0346865_49	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0346865_49	UniRef90	UniRef90_L1QEZ9	Phage prohead protease, HK97 family	NA
UHGV-0346865_49	eggNOG-mapper	545697.HMPREF0216_01743	Phage prohead protease, HK97 family	NA
UHGV-0346865_49	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0346865_49	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0346865_49	COG	COG3740	Phage head maturation protease	NA
UHGV-0346865_49	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0346865_50	PHROG	phrog_12	portal protein	head and packaging
UHGV-0346865_50	UniRef90	UniRef90_UPI000A002DC7	phage portal protein	NA
UHGV-0346865_50	eggNOG-mapper	1285586.H131_21312	Portal protein	NA
UHGV-0346865_50	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0346865_50	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0346865_50	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0346865_50	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0346865_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0346865_51	UniRef90	UniRef90_K6DIF2	Phage terminase large subunit	NA
UHGV-0346865_51	eggNOG-mapper	1196031.ALEG01000039_gene1812	Terminase	NA
UHGV-0346865_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0346865_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0346865_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0346865_51	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0346865_52	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0346865_52	UniRef90	UniRef90_A0A1W1X5Z0	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0346865_52	eggNOG-mapper	1196031.ALEG01000039_gene1811	Phage terminase, small subunit	NA
UHGV-0346865_52	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0346865_52	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0346865_52	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0346865_52	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0346865_53	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0346865_53	UniRef90	UniRef90_A0A2P1S5Y5	HNHc domain-containing protein	NA
UHGV-0346865_53	eggNOG-mapper	536233.CLO_1358	NA	NA
UHGV-0346865_55	PHROG	phrog_1558	NA	unknown function
UHGV-0346865_55	UniRef90	UniRef90_UPI0005DD5B35	helix-turn-helix domain-containing protein	NA
UHGV-0346865_55	eggNOG-mapper	1211817.CCAT010000007_gene1046	NA	NA
UHGV-0346865_55	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0346865_56	PHROG	phrog_824	NA	unknown function
UHGV-0346865_56	UniRef90	UniRef90_UPI000B821158	VRR-NUC domain-containing protein	NA
UHGV-0346865_56	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0346865_56	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0346865_56	Structural annotation	PF08774	NA	NA