UHGV-0348600

Genome information

vOTU vOTU-012026

Genome length 42,631 bps

CDS count 66

Completeness 97.99% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0348600
vOTU ID	vOTU-012026
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5935987_119_6089_round347~1923647
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.61
Jumbo phage	No

Genome content
Genome length	42,631 bps
GC content	37.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.24%
Average CDS length	579.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0348600_1	PHROG	phrog_19074	NA	unknown function
UHGV-0348600_1	UniRef90	UniRef90_UPI0011063F52	phage tail tape measure protein	NA
UHGV-0348600_1	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0348600_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0348600_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0348600_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0348600_2	PHROG	phrog_19323	NA	unknown function
UHGV-0348600_2	UniRef90	UniRef90_UPI00191F19EB	SHOCT domain-containing protein	NA
UHGV-0348600_2	eggNOG-mapper	290402.Cbei_1346	NA	NA
UHGV-0348600_2	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0348600_4	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0348600_4	UniRef90	UniRef90_UPI00156E29B0	Rha family transcriptional regulator	NA
UHGV-0348600_4	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0348600_4	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0348600_4	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0348600_4	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0348600_4	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0348600_5	eggNOG-mapper	537013.CLOSTMETH_00118	NA	NA
UHGV-0348600_6	UniRef90	UniRef90_UPI001570C906	helix-turn-helix transcriptional regulator	NA
UHGV-0348600_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0348600_8	PHROG	phrog_706	NA	unknown function
UHGV-0348600_8	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0348600_8	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0348600_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0348600_8	Structural annotation	PF06854	NA	NA
UHGV-0348600_9	PHROG	phrog_4450	NA	unknown function
UHGV-0348600_9	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0348600_9	Pfam	PF20378	NA	DUF6673
UHGV-0348600_9	Structural annotation	PF20378	NA	NA
UHGV-0348600_10	PHROG	phrog_3099	NA	unknown function
UHGV-0348600_10	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0348600_10	eggNOG-mapper	1151292.QEW_4530	NA	NA
UHGV-0348600_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0348600_11	PHROG	phrog_3266	tail completion	connector
UHGV-0348600_11	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0348600_11	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0348600_11	Structural annotation	PF12691	NA	NA
UHGV-0348600_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0348600_12	UniRef90	UniRef90_UPI001C012488	minor capsid protein	NA
UHGV-0348600_12	eggNOG-mapper	1499683.CCFF01000017_gene2571	Minor capsid protein	NA
UHGV-0348600_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0348600_12	Structural annotation	PF11114	NA	NA
UHGV-0348600_13	PHROG	phrog_3366	NA	unknown function
UHGV-0348600_13	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0348600_13	Pfam	PF20536	NA	DUF6751
UHGV-0348600_13	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0348600_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0348600_14	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0348600_15	PHROG	phrog_247	major head protein	head and packaging
UHGV-0348600_15	UniRef90	UniRef90_A0A1Q2C3W4	Phage coat protein	NA
UHGV-0348600_15	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0348600_15	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0348600_15	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0348600_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0348600_16	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0348600_16	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0348600_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0348600_16	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0348600_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0348600_18	UniRef90	UniRef90_A0A6N2R2Y7	Phage minor capsid protein 2	NA
UHGV-0348600_18	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0348600_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0348600_18	COG	COG2369	NA	NA
UHGV-0348600_18	Structural annotation	PF06152	NA	NA
UHGV-0348600_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0348600_19	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0348600_19	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0348600_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0348600_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0348600_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0348600_20	PHROG	phrog_10250	NA	unknown function
UHGV-0348600_20	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0348600_20	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0348600_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0348600_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0348600_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0348600_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0348600_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0348600_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0348600_21	UniRef90	UniRef90_A0A1Q6KFD5	Phage portal protein	NA
UHGV-0348600_21	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0348600_21	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0348600_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0348600_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0348600_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0348600_22	PHROG	phrog_918	NA	unknown function
UHGV-0348600_22	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0348600_22	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0348600_22	Pfam	PF19791	NA	DUF6275
UHGV-0348600_22	Structural annotation	PF19791	NA	NA
UHGV-0348600_23	PHROG	phrog_872	NA	unknown function
UHGV-0348600_23	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0348600_23	dbAPIS	APIS052	NA	NA
UHGV-0348600_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0348600_24	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0348600_24	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0348600_24	Structural annotation	PF02996	NA	NA
UHGV-0348600_26	UniRef90	UniRef90_A0A374AM63	NA	NA
UHGV-0348600_26	Pfam	PF12664	NA	DUF3789
UHGV-0348600_27	PHROG	phrog_21101	NA	unknown function
UHGV-0348600_27	UniRef90	UniRef90_D4MWL6	NA	NA
UHGV-0348600_27	eggNOG-mapper	592028.GCWU000321_00789	NA	NA
UHGV-0348600_27	Pfam	PF07866	NA	DUF1653
UHGV-0348600_27	COG	COG4728	NA	NA
UHGV-0348600_27	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0348600_29	PHROG	phrog_31515	NA	unknown function
UHGV-0348600_29	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0348600_30	eggNOG-mapper	1121871.AUAT01000002_gene1365	NA	NA
UHGV-0348600_32	PHROG	phrog_17690	NA	unknown function
UHGV-0348600_32	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0348600_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0348600_33	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0348600_33	UniRef90	UniRef90_D4MWK9	Phage regulatory protein, rha family	NA
UHGV-0348600_33	eggNOG-mapper	1582156.A0A0A8WJ71_9CAUD	DNA binding	NA
UHGV-0348600_33	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0348600_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0348600_33	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0348600_33	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0348600_34	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0348600_34	UniRef90	UniRef90_B0P3C8	NA	NA
UHGV-0348600_34	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-0348600_34	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0348600_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0348600_34	Structural annotation	PF14297	NA	NA
UHGV-0348600_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0348600_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0348600_35	UniRef90	UniRef90_D4MWK7	Holliday junction resolvase	NA
UHGV-0348600_35	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0348600_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0348600_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0348600_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0348600_36	PHROG	phrog_1029	NA	unknown function
UHGV-0348600_36	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0348600_36	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0348600_37	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0348600_37	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0348600_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0348600_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0348600_38	UniRef90	UniRef90_A0A173RED8	p33	NA
UHGV-0348600_38	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0348600_38	Pfam	PF03837	RecT family	RecT
UHGV-0348600_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0348600_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0348600_38	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0348600_39	PHROG	phrog_674	NA	unknown function
UHGV-0348600_39	UniRef90	UniRef90_A0A415G8D2	NA	NA
UHGV-0348600_39	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0348600_39	Pfam	PF07083	NA	DUF1351
UHGV-0348600_39	Structural annotation	PF07083	NA	NA
UHGV-0348600_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0348600_41	UniRef90	UniRef90_B0P3C0	YqaJ viral recombinase family protein	NA
UHGV-0348600_41	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0348600_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0348600_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0348600_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0348600_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0348600_42	PHROG	phrog_3777	NA	unknown function
UHGV-0348600_42	Structural annotation	PF18441	NA	NA
UHGV-0348600_46	PHROG	phrog_6058	NA	unknown function
UHGV-0348600_46	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0348600_46	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0348600_47	Structural annotation	PF09827, MF_01471, COG1343	NA	NA
UHGV-0348600_49	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0348600_49	UniRef90	UniRef90_L1Q6Z0	DNA-binding helix-turn-helix protein	NA
UHGV-0348600_49	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0348600_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0348600_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0348600_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0348600_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0348600_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0348600_50	UniRef90	UniRef90_A0A374AM30	XRE family transcriptional regulator	NA
UHGV-0348600_50	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0348600_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0348600_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0348600_50	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0348600_51	PHROG	phrog_87	metallo-protease	other
UHGV-0348600_51	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0348600_51	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0348600_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0348600_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0348600_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0348600_52	UniRef90	UniRef90_A0A417V8U5	BIG2 domain-containing protein	NA
UHGV-0348600_52	eggNOG-mapper	397290.C810_01424	NA	NA
UHGV-0348600_53	KOfam	K14059	int; integrase	NA
UHGV-0348600_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0348600_53	UniRef90	UniRef90_A0A173S3V2	Tyrosine recombinase XerD	NA
UHGV-0348600_53	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0348600_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0348600_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0348600_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0348600_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0348600_54	PHROG	phrog_435	endolysin	lysis
UHGV-0348600_54	UniRef90	UniRef90_D4MWM5	Bacterial SH3 domain./N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0348600_54	eggNOG-mapper	1408823.AXUS01000013_gene1262	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0348600_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0348600_54	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0348600_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0348600_54	Structural annotation	PF01520, PF08239, MF_00562, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0348600_55	eggNOG-mapper	1291050.JAGE01000001_gene794	NA	NA
UHGV-0348600_56	PHROG	phrog_937	hemolysin	other
UHGV-0348600_56	eggNOG-mapper	1235792.C808_00576	NA	NA
UHGV-0348600_59	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0348600_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0348600_59	UniRef90	UniRef90_A0A173REH2	Tyrosine recombinase XerC	NA
UHGV-0348600_59	eggNOG-mapper	97139.C824_00246	Belongs to the 'phage' integrase family	NA
UHGV-0348600_59	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0348600_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0348600_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0348600_59	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0348600_63	PHROG	phrog_18608	NA	unknown function
UHGV-0348600_63	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0348600_63	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0348600_64	PHROG	phrog_3558	tail protein	tail
UHGV-0348600_64	UniRef90	UniRef90_A0A417UT74	Prophage_tail domain-containing protein	NA
UHGV-0348600_64	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0348600_64	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0348600_64	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0348600_64	COG	COG4926	Phage-related protein	NA
UHGV-0348600_64	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0348600_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0348600_65	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0348600_65	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0348600_65	COG	COG4722	Phage-related protein YomH	NA
UHGV-0348600_65	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0348600_66	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0348600_66	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0348600_66	UniRef90	UniRef90_UPI0015703712	phage tail tape measure protein	NA
UHGV-0348600_66	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-0348600_66	COG	COG5283	Phage-related tail protein	NA
UHGV-0348600_66	Structural annotation	PF10145, TIGR01760	NA	NA