UHGV-0349383

Genome information

Genome length 21,881 bps

CDS count 27

Completeness 56.86% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0349383
vOTU ID	vOTU-024185
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR9040455_141_3139_round8-12~968169
BioSample	SAMN11391623
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.91
Jumbo phage	No

Genome content
Genome length	21,881 bps
GC content	37.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	96.25%
Average CDS length	783.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0349383_1	PHROG	phrog_3727	NA	unknown function
UHGV-0349383_1	UniRef90	UniRef90_UPI001BE9DDE2	NA	NA
UHGV-0349383_1	eggNOG-mapper	1397696.KK211189_gene1182	NA	NA
UHGV-0349383_1	Structural annotation	PF16781, MF_00791, TIGR03780, COG2967	NA	NA
UHGV-0349383_2	KOfam	K14059	int; integrase	NA
UHGV-0349383_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0349383_2	UniRef90	UniRef90_R5JI49	Integrase	NA
UHGV-0349383_2	eggNOG-mapper	1035196.HMPREF9998_01270	DNA integration	NA
UHGV-0349383_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0349383_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0349383_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0349383_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0349383_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0349383_3	PHROG	phrog_3088	amidase	lysis
UHGV-0349383_3	UniRef90	UniRef90_D3MU92	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0349383_3	eggNOG-mapper	596329.HMPREF0631_1398	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0349383_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0349383_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0349383_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0349383_5	PHROG	phrog_1129	holin	lysis
UHGV-0349383_5	UniRef90	UniRef90_UPI0018984641	phage holin family protein	NA
UHGV-0349383_5	eggNOG-mapper	1230342.CTM_01529	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0349383_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0349383_6	PHROG	phrog_4105	NA	unknown function
UHGV-0349383_6	eggNOG-mapper	1035196.HMPREF9998_01696	NA	NA
UHGV-0349383_8	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0349383_8	PHROG	phrog_819	tail protein	tail
UHGV-0349383_8	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0349383_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0349383_9	PHROG	phrog_34633	NA	unknown function
UHGV-0349383_10	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0349383_10	UniRef90	UniRef90_E0E210	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0349383_10	eggNOG-mapper	596315.HMPREF0634_0228	Phage minor structural protein	NA
UHGV-0349383_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0349383_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0349383_10	COG	COG4926	Phage-related protein	NA
UHGV-0349383_10	Structural annotation	PF06605, PF21466, PF21683, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0349383_11	PHROG	phrog_5163	minor tail protein	tail
UHGV-0349383_11	UniRef90	UniRef90_E1KWH8	Putative phage tail component domain protein	NA
UHGV-0349383_11	eggNOG-mapper	883081.HMPREF9698_01617	Phage tail protein	NA
UHGV-0349383_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0349383_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0349383_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0349383_11	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0349383_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0349383_12	UniRef90	UniRef90_A0A150FQY7	Phage tail tape measure protein, TP901 family	NA
UHGV-0349383_12	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0349383_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0349383_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0349383_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0349383_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0349383_13	PHROG	phrog_7423	NA	unknown function
UHGV-0349383_13	UniRef90	UniRef90_A0A429ZWX6	Phenylalanine racemase	NA
UHGV-0349383_13	eggNOG-mapper	1235792.C808_05347	NA	NA
UHGV-0349383_14	UniRef90	UniRef90_C5WIA0	NA	NA
UHGV-0349383_14	eggNOG-mapper	1347392.CCEZ01000005_gene1242	NA	NA
UHGV-0349383_15	PHROG	phrog_1407	major tail protein	tail
UHGV-0349383_15	UniRef90	UniRef90_A0A1T4K678	Phage major tail protein, TP901-1 family	NA
UHGV-0349383_15	eggNOG-mapper	1347392.CCEZ01000005_gene1241	Phage tail tube protein	NA
UHGV-0349383_15	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0349383_15	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0349383_15	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0349383_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0349383_16	PHROG	phrog_176	tail terminator	connector
UHGV-0349383_16	UniRef90	UniRef90_UPI0005B2B1E6	NA	NA
UHGV-0349383_16	eggNOG-mapper	1347392.CCEZ01000005_gene1240	NA	NA
UHGV-0349383_16	Pfam	PF16807	NA	DUF5072
UHGV-0349383_16	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0349383_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0349383_17	UniRef90	UniRef90_Q9K750	BH3523 protein	NA
UHGV-0349383_17	eggNOG-mapper	272558.10176147	NA	NA
UHGV-0349383_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0349383_18	UniRef90	UniRef90_C5WIA4	NA	NA
UHGV-0349383_18	eggNOG-mapper	1232430.CAVG010000113_gene1018	NA	NA
UHGV-0349383_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0349383_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0349383_19	UniRef90	UniRef90_UPI00193A23DF	phage head-tail connector protein	NA
UHGV-0349383_19	eggNOG-mapper	1235792.C808_05341	NA	NA
UHGV-0349383_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0349383_19	Structural annotation	PF05135	NA	NA
UHGV-0349383_20	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0349383_20	UniRef90	UniRef90_A0A410T4Q5	Rho termination protein	NA
UHGV-0349383_20	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-0349383_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0349383_21	UniRef90	UniRef90_A0A847D7U9	Big_12 domain-containing protein	NA
UHGV-0349383_21	eggNOG-mapper	1232430.CAVG010000113_gene1021	NA	NA
UHGV-0349383_21	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0349383_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0349383_22	UniRef90	UniRef90_UPI00189A8A5B	NA	NA
UHGV-0349383_22	eggNOG-mapper	1347392.CCEZ01000005_gene1235	NA	NA
UHGV-0349383_22	Pfam	PF14265	NA	DUF4355
UHGV-0349383_22	Structural annotation	PF14265	NA	NA
UHGV-0349383_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0349383_24	UniRef90	UniRef90_A0A6N3FE95	Phage Mu protein F like protein	NA
UHGV-0349383_24	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0349383_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0349383_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0349383_24	COG	COG2369	NA	NA
UHGV-0349383_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0349383_25	UniRef90	UniRef90_UPI001D15C504	phage portal protein	NA
UHGV-0349383_25	eggNOG-mapper	1347392.CCEZ01000005_gene1230	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0349383_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0349383_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0349383_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0349383_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0349383_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0349383_26	UniRef90	UniRef90_A0A2N6SUF3	PBSX family phage terminase large subunit	NA
UHGV-0349383_26	eggNOG-mapper	1347392.CCEZ01000005_gene1229	Phage terminase, large subunit, PBSX family	NA
UHGV-0349383_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0349383_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0349383_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0349383_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0349383_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0349383_27	UniRef90	UniRef90_UPI001D093E46	terminase small subunit	NA
UHGV-0349383_27	eggNOG-mapper	1219626.HMPREF1639_07145	Terminase Small Subunit	NA
UHGV-0349383_27	COG	COG3728	Phage terminase, small subunit	NA