UHGV-0350154

Genome information

vOTU vOTU-012028

Genome length 39,786 bps

CDS count 61

Completeness 94.82% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0350154
vOTU ID	vOTU-012028
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR9108953_141_222176_round8-12~2985304
BioSample	SAMEA3444271
Country	Uganda
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.94
Jumbo phage	No

Genome content
Genome length	39,786 bps
GC content	55.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	94.35%
Average CDS length	619.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0350154_1	PHROG	phrog_19111	NA	unknown function
UHGV-0350154_1	eggNOG-mapper	1297617.JPJD01000034_gene670	NA	NA
UHGV-0350154_1	Structural annotation	PF05096, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0350154_2	eggNOG-mapper	742823.HMPREF9465_00923	Membrane	NA
UHGV-0350154_2	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0350154_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0350154_3	PHROG	phrog_12796	tail fiber protein	tail
UHGV-0350154_3	UniRef90	UniRef90_UPI0013F616D1	short-chain fatty acid transporter	NA
UHGV-0350154_3	eggNOG-mapper	762966.HMPREF9439_01055	tail collar domain protein	NA
UHGV-0350154_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0350154_3	Structural annotation	PF14600	NA	NA
UHGV-0350154_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0350154_4	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0350154_4	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0350154_4	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0350154_4	Structural annotation	PF17375	NA	NA
UHGV-0350154_5	PHROG	phrog_587	structural protein	head and packaging
UHGV-0350154_5	UniRef90	UniRef90_UPI0013F5E2B1	NA	NA
UHGV-0350154_5	eggNOG-mapper	742823.HMPREF9465_00926	NA	NA
UHGV-0350154_5	Pfam	PF11041	NA	DUF2612
UHGV-0350154_5	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0350154_6	PHROG	phrog_6	baseplate protein	tail
UHGV-0350154_6	UniRef90	UniRef90_K1KI67	Baseplate_J domain-containing protein	NA
UHGV-0350154_6	eggNOG-mapper	742823.HMPREF9465_00927	Baseplate J-like protein	NA
UHGV-0350154_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0350154_6	COG	COG3299	NA	NA
UHGV-0350154_6	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0350154_7	PHROG	phrog_120	baseplate protein	tail
UHGV-0350154_7	eggNOG-mapper	1203554.HMPREF1476_01519	NA	NA
UHGV-0350154_7	Structural annotation	PF10761, TIGR03357, COG3628	NA	NA
UHGV-0350154_8	PHROG	phrog_3216	baseplate assembly protein	tail
UHGV-0350154_8	UniRef90	UniRef90_K1JIF5	Phage_spike domain-containing protein	NA
UHGV-0350154_8	eggNOG-mapper	742823.HMPREF9465_00928	Baseplate assembly protein	NA
UHGV-0350154_8	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0350154_8	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0350154_8	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0350154_8	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0350154_9	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0350154_9	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-0350154_9	eggNOG-mapper	469610.HMPREF0189_01203	NA	NA
UHGV-0350154_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0350154_10	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0350154_10	eggNOG-mapper	1236501.BAJU01000020_gene2009	NA	NA
UHGV-0350154_11	PHROG	phrog_1830	NA	unknown function
UHGV-0350154_11	UniRef90	UniRef90_F3QJE7	Conserved domain protein	NA
UHGV-0350154_11	eggNOG-mapper	469610.HMPREF0189_01201	NA	NA
UHGV-0350154_11	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0350154_12	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0350154_12	eggNOG-mapper	742823.HMPREF9465_00932	domain protein	NA
UHGV-0350154_12	COG	COG1511	NA	NA
UHGV-0350154_13	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0350154_13	eggNOG-mapper	742823.HMPREF9465_00933	NA	NA
UHGV-0350154_13	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0350154_13	Structural annotation	PF21822	NA	NA
UHGV-0350154_14	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0350154_14	eggNOG-mapper	762966.HMPREF9439_01045	NA	NA
UHGV-0350154_14	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0350154_15	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0350154_15	UniRef90	UniRef90_UPI0013F5A4D1	NA	NA
UHGV-0350154_15	eggNOG-mapper	742823.HMPREF9465_00935	NA	NA
UHGV-0350154_15	Pfam	PF11863	NA	DUF3383
UHGV-0350154_15	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0350154_16	PHROG	phrog_1876	NA	unknown function
UHGV-0350154_16	eggNOG-mapper	762966.HMPREF9439_01041	NA	NA
UHGV-0350154_16	Structural annotation	PF16807	NA	NA
UHGV-0350154_17	PHROG	phrog_1912	head protein	head and packaging
UHGV-0350154_17	eggNOG-mapper	762966.HMPREF9439_01040	NA	NA
UHGV-0350154_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0350154_18	PHROG	phrog_222	tail protein	tail
UHGV-0350154_18	UniRef90	UniRef90_A0A2G0Q633	Bacteriophage protein	NA
UHGV-0350154_18	eggNOG-mapper	1205683.CAKR01000013_gene1186	NA	NA
UHGV-0350154_19	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0350154_19	eggNOG-mapper	469610.HMPREF0189_01191	NA	NA
UHGV-0350154_19	Pfam	PF13262	NA	DUF4054
UHGV-0350154_19	Structural annotation	PF13262	NA	NA
UHGV-0350154_21	PHROG	phrog_264	major head protein	head and packaging
UHGV-0350154_21	UniRef90	UniRef90_UPI000F0C52E9	NA	NA
UHGV-0350154_21	eggNOG-mapper	1205683.CAKR01000013_gene1189	Protein conserved in bacteria	NA
UHGV-0350154_21	Pfam	PF09950	NA	DUF2184
UHGV-0350154_21	COG	COG4834	NA	NA
UHGV-0350154_21	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0350154_22	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0350154_22	eggNOG-mapper	1408428.JNJP01000012_gene1116	NA	NA
UHGV-0350154_23	KOfam	K09960	NA	NA
UHGV-0350154_23	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0350154_23	UniRef90	UniRef90_UPI001E52763D	NA	NA
UHGV-0350154_23	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0350154_23	Pfam	PF09979	NA	DUF2213
UHGV-0350154_23	COG	COG3566	NA	NA
UHGV-0350154_23	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0350154_24	PHROG	phrog_15127	head protein	head and packaging
UHGV-0350154_24	UniRef90	UniRef90_A0A1Y4GG87	INTEIN_C_TER domain-containing protein	NA
UHGV-0350154_24	eggNOG-mapper	230158.Q7Y5U5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0350154_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0350154_24	Structural annotation	NF011418, COG1372	NA	NA
UHGV-0350154_25	KOfam	K09961	NA	NA
UHGV-0350154_25	PHROG	phrog_146	portal protein	head and packaging
UHGV-0350154_25	UniRef90	UniRef90_UPI001D0BAEDD	NA	NA
UHGV-0350154_25	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0350154_25	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0350154_25	COG	COG3567	NA	NA
UHGV-0350154_25	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0350154_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0350154_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0350154_26	UniRef90	UniRef90_A0A139K4Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0350154_26	eggNOG-mapper	2754.EH55_06905	DNA packaging	NA
UHGV-0350154_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0350154_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0350154_26	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0350154_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0350154_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0350154_26	Structural annotation	PF04466, PF13403, PF17288, MF_04145, TIGR01547, NF038136, COG1783	NA	NA
UHGV-0350154_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0350154_27	UniRef90	UniRef90_UPI001F4FD8EF	DNA-binding protein	NA
UHGV-0350154_27	eggNOG-mapper	742823.HMPREF9465_00949	NA	NA
UHGV-0350154_28	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0350154_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0350154_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0350154_29	UniRef90	UniRef90_A0A3B9Q6M1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0350154_29	eggNOG-mapper	279238.Saro_3008	Endodeoxyribonuclease RusA	NA
UHGV-0350154_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0350154_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0350154_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0350154_32	Structural annotation	COG3201	NA	NA
UHGV-0350154_36	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0350154_36	PHROG	phrog_5482	NA	unknown function
UHGV-0350154_36	UniRef90	UniRef90_A0A643FF24	AAA family ATPase	NA
UHGV-0350154_36	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-0350154_36	Pfam	PF13481	AAA domain	AAA_25
UHGV-0350154_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-0350154_36	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0350154_38	PHROG	phrog_3992	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0350154_38	UniRef90	UniRef90_UPI0003638959	helix-turn-helix domain-containing protein	NA
UHGV-0350154_38	eggNOG-mapper	1203554.HMPREF1476_00237	Helix-turn-helix domain	NA
UHGV-0350154_38	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0350154_38	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0350154_38	Structural annotation	PF01978, MF_01819, NF040939, COG5529	NA	NA
UHGV-0350154_40	PHROG	phrog_1281	NA	unknown function
UHGV-0350154_40	UniRef90	UniRef90_UPI00063DB241	NA	NA
UHGV-0350154_40	eggNOG-mapper	393921.HQ45_06855	Phage-associated protein	NA
UHGV-0350154_40	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0350154_40	COG	COG3600	NA	NA
UHGV-0350154_40	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0350154_43	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0350154_43	UniRef90	UniRef90_A0A6J5KNV3	Essential recombination function protein	NA
UHGV-0350154_43	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0350154_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-0350154_43	Structural annotation	PF04404, COG5055	NA	NA
UHGV-0350154_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0350154_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0350154_44	UniRef90	UniRef90_A0A7C4I9Q3	Single-stranded DNA-binding protein	NA
UHGV-0350154_44	eggNOG-mapper	75379.Tint_0071	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0350154_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0350154_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0350154_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0350154_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0350154_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0350154_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0350154_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0350154_54	eggNOG-mapper	742821.HMPREF9464_01810	NA	NA
UHGV-0350154_55	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0350154_55	PHROG	phrog_894	endolysin	lysis
UHGV-0350154_55	UniRef90	UniRef90_A0A3B9QA10	Peptidase_M15_3 domain-containing protein	NA
UHGV-0350154_55	eggNOG-mapper	1327968.R9ZW03_9VIRU	Peptidase M15	NA
UHGV-0350154_55	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0350154_55	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0350154_56	PHROG	phrog_199	holin	lysis
UHGV-0350154_56	UniRef90	UniRef90_UPI000A02732D	phage holin family protein	NA
UHGV-0350154_56	eggNOG-mapper	742821.HMPREF9464_01076	Bacteriophage holin family	NA
UHGV-0350154_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0350154_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0350154_56	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0350154_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0350154_57	PHROG	phrog_2143	NA	unknown function
UHGV-0350154_57	UniRef90	UniRef90_UPI00158AE458	glucosaminidase domain-containing protein	NA
UHGV-0350154_57	eggNOG-mapper	742823.HMPREF9465_00917	NA	NA
UHGV-0350154_58	PHROG	phrog_3342	NA	unknown function
UHGV-0350154_58	UniRef90	UniRef90_UPI0013F5F9D7	pseudouridine synthase	NA
UHGV-0350154_58	eggNOG-mapper	563192.HMPREF0179_03263	NA	NA
UHGV-0350154_59	PHROG	phrog_134	NA	unknown function
UHGV-0350154_59	UniRef90	UniRef90_A0A139DP02	Phage tail fiber protein	NA
UHGV-0350154_59	eggNOG-mapper	1317118.ATO8_18635	NA	NA
UHGV-0350154_59	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0350154_60	UniRef90	UniRef90_R6HCD7	RNA binding protein Jsn1 putative	NA
UHGV-0350154_61	PHROG	phrog_19111	NA	unknown function
UHGV-0350154_61	eggNOG-mapper	645991.Sgly_0788	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0350154_61	COG	COG5301	Phage-related tail fiber protein	NA