UHGV-0351108

Genome information

Genome length 39,429 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0351108
vOTU ID	vOTU-009668
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1305887_119_146344_round347~3016749
BioSample	SAMEA3888923
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.65
Jumbo phage	No

Genome content
Genome length	39,429 bps
GC content	45.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.43%
Average CDS length	587.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0351108_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0351108_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0351108_1	UniRef90	UniRef90_A0A1G9QFM2	Methyltransferase	NA
UHGV-0351108_1	eggNOG-mapper	1123511.KB905857_gene1684	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0351108_1	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0351108_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0351108_1	COG	COG0863	DNA modification methylase	NA
UHGV-0351108_1	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0351108_3	PHROG	phrog_12389	NA	unknown function
UHGV-0351108_3	eggNOG-mapper	1123288.SOV_2c00270	NA	NA
UHGV-0351108_4	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0351108_4	UniRef90	UniRef90_UPI001CD7A27A	helix-turn-helix domain-containing protein	NA
UHGV-0351108_4	eggNOG-mapper	1128111.HMPREF0870_00986	NA	NA
UHGV-0351108_4	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0351108_6	PHROG	phrog_16123	NA	unknown function
UHGV-0351108_6	eggNOG-mapper	1064535.MELS_1123	NA	NA
UHGV-0351108_7	PHROG	phrog_18996	NA	unknown function
UHGV-0351108_7	eggNOG-mapper	864563.HMPREF9166_1229	NA	NA
UHGV-0351108_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0351108_8	PHROG	phrog_435	endolysin	lysis
UHGV-0351108_8	UniRef90	UniRef90_UPI0004172933	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0351108_8	eggNOG-mapper	1232428.CAVO010000002_gene2340	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0351108_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0351108_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0351108_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0351108_9	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-0351108_10	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-0351108_10	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0351108_10	Structural annotation	PF18998	NA	NA
UHGV-0351108_11	PHROG	phrog_13589	NA	unknown function
UHGV-0351108_11	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-0351108_11	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0351108_12	eggNOG-mapper	1232428.CAVO010000002_gene2343	NA	NA
UHGV-0351108_13	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA
UHGV-0351108_13	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0351108_14	PHROG	phrog_4105	NA	unknown function
UHGV-0351108_17	KOfam	K14059	int; integrase	NA
UHGV-0351108_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0351108_17	UniRef90	UniRef90_S7J9K9	Site-specific tyrosine recombinase XerC	NA
UHGV-0351108_17	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0351108_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0351108_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0351108_17	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0351108_18	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0351108_18	UniRef90	UniRef90_UPI0018C5ACB1	phage tail protein	NA
UHGV-0351108_18	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0351108_18	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0351108_18	Structural annotation	PF12571, NF012201	NA	NA
UHGV-0351108_19	PHROG	phrog_521	tail protein	tail
UHGV-0351108_19	UniRef90	UniRef90_UPI0005C8D4B8	NA	NA
UHGV-0351108_19	eggNOG-mapper	883156.HMPREF9282_00966	NA	NA
UHGV-0351108_19	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0351108_19	COG	COG3778	NA	NA
UHGV-0351108_19	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0351108_20	PHROG	phrog_6	baseplate protein	tail
UHGV-0351108_20	UniRef90	UniRef90_UPI0003FC043F	baseplate J/gp47 family protein	NA
UHGV-0351108_20	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-0351108_20	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0351108_20	COG	COG3299	NA	NA
UHGV-0351108_20	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0351108_21	PHROG	phrog_120	baseplate protein	tail
UHGV-0351108_21	UniRef90	UniRef90_UPI00041A1272	NA	NA
UHGV-0351108_21	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0351108_21	Pfam	PF10934	NA	DUF2634
UHGV-0351108_21	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0351108_21	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0351108_22	PHROG	phrog_579	NA	unknown function
UHGV-0351108_22	UniRef90	UniRef90_UPI0003F53788	NA	NA
UHGV-0351108_22	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0351108_22	Pfam	PF10844	NA	DUF2577
UHGV-0351108_22	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0351108_23	PHROG	phrog_400	tail protein	tail
UHGV-0351108_23	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0351108_23	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0351108_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0351108_23	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0351108_24	PHROG	phrog_5184	NA	unknown function
UHGV-0351108_24	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0351108_24	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0351108_24	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0351108_24	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0351108_24	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0351108_25	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0351108_25	UniRef90	UniRef90_UPI000420BBE9	phage tail tape measure protein	NA
UHGV-0351108_25	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0351108_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0351108_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0351108_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0351108_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0351108_26	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0351108_26	UniRef90	UniRef90_S0FPA4	Phage XkdN-like protein	NA
UHGV-0351108_26	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0351108_26	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0351108_26	Structural annotation	PF08890	NA	NA
UHGV-0351108_27	PHROG	phrog_365	tail protein	tail
UHGV-0351108_27	UniRef90	UniRef90_UPI001F496238	phage tail tube protein	NA
UHGV-0351108_27	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0351108_27	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0351108_27	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0351108_28	PHROG	phrog_1480	tail sheath	tail
UHGV-0351108_28	UniRef90	UniRef90_UPI000412D4F6	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0351108_28	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0351108_28	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0351108_28	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0351108_28	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0351108_29	PHROG	phrog_525	NA	unknown function
UHGV-0351108_29	Pfam	PF20765	NA	DUF6838
UHGV-0351108_29	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0351108_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0351108_30	UniRef90	UniRef90_UPI00041F1BC3	HK97 gp10 family phage protein	NA
UHGV-0351108_30	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0351108_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0351108_30	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0351108_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-0351108_31	UniRef90	UniRef90_UPI00041CF081	phage head closure protein	NA
UHGV-0351108_31	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0351108_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0351108_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0351108_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0351108_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0351108_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0351108_32	UniRef90	UniRef90_UPI0004196A66	head-tail connector protein	NA
UHGV-0351108_32	eggNOG-mapper	1209989.TepiRe1_2602	Phage gp6-like head-tail connector protein	NA
UHGV-0351108_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0351108_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0351108_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0351108_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0351108_33	UniRef90	UniRef90_UPI0003FF2BCE	phage major capsid protein	NA
UHGV-0351108_33	eggNOG-mapper	1232428.CAVO010000003_gene1009	phage major capsid protein, HK97 family	NA
UHGV-0351108_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0351108_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0351108_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0351108_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0351108_34	KOfam	K06904	NA	NA
UHGV-0351108_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0351108_34	UniRef90	UniRef90_UPI0008FF81E0	HK97 family phage prohead protease	NA
UHGV-0351108_34	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0351108_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0351108_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0351108_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0351108_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0351108_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0351108_35	UniRef90	UniRef90_UPI00041926A8	phage portal protein	NA
UHGV-0351108_35	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0351108_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0351108_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0351108_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0351108_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0351108_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0351108_36	UniRef90	UniRef90_UPI001E2FA9B6	terminase large subunit	NA
UHGV-0351108_36	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0351108_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0351108_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0351108_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0351108_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0351108_37	PHROG	phrog_1066	NA	unknown function
UHGV-0351108_37	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0351108_37	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0351108_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0351108_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0351108_38	UniRef90	UniRef90_A0A356UL78	HNH domain-containing protein	NA
UHGV-0351108_38	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0351108_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0351108_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0351108_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0351108_39	UniRef90	UniRef90_UPI0004021AD4	NA	NA
UHGV-0351108_39	eggNOG-mapper	1232428.CAVO010000003_gene1014	NA	NA
UHGV-0351108_39	Pfam	PF07374	NA	DUF1492
UHGV-0351108_39	Structural annotation	PF07374, TIGR02984, COG2739	NA	NA
UHGV-0351108_44	PHROG	phrog_21731	NA	unknown function
UHGV-0351108_44	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0351108_44	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-0351108_46	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0351108_46	UniRef90	UniRef90_UPI001E47E116	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0351108_46	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0351108_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0351108_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0351108_47	eggNOG-mapper	1232428.CAVO010000003_gene1017	NA	NA
UHGV-0351108_47	Structural annotation	PF21578	NA	NA
UHGV-0351108_48	PHROG	phrog_15609	NA	unknown function
UHGV-0351108_48	UniRef90	UniRef90_UPI00040904D0	NA	NA
UHGV-0351108_48	eggNOG-mapper	1232428.CAVO010000003_gene1018	NA	NA
UHGV-0351108_48	Pfam	PF11300	NA	DUF3102
UHGV-0351108_48	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0351108_48	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0351108_49	PHROG	phrog_8470	NA	unknown function
UHGV-0351108_49	UniRef90	UniRef90_UPI0003FACD17	PcfJ domain-containing protein	NA
UHGV-0351108_49	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0351108_49	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0351108_50	eggNOG-mapper	1157490.EL26_01850	NA	NA
UHGV-0351108_50	Structural annotation	PF14058	NA	NA
UHGV-0351108_51	PHROG	phrog_25045	NA	unknown function
UHGV-0351108_51	UniRef90	UniRef90_UPI0006782F3E	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0351108_51	eggNOG-mapper	1232428.CAVO010000067_gene442	Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and or DivIC to the division machinery	NA
UHGV-0351108_51	Pfam	PF01476	LysM domain	LysM
UHGV-0351108_51	COG	COG1388	LysM repeat	NA
UHGV-0351108_51	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0351108_53	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0351108_53	Structural annotation	PF21531, NF033787	NA	NA
UHGV-0351108_58	UniRef90	UniRef90_UPI0008D90F56	helix-turn-helix domain-containing protein	NA
UHGV-0351108_58	eggNOG-mapper	511437.Lbuc_1554	NA	NA
UHGV-0351108_58	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0351108_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0351108_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0351108_59	UniRef90	UniRef90_UPI0005CA40F3	helix-turn-helix domain-containing protein	NA
UHGV-0351108_59	eggNOG-mapper	861450.HMPREF0080_02022	Helix-turn-helix XRE-family like proteins	NA
UHGV-0351108_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0351108_59	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0351108_59	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0351108_60	PHROG	phrog_20936	NA	unknown function
UHGV-0351108_60	UniRef90	UniRef90_UPI000F8E443B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0351108_60	Structural annotation	PF06114	NA	NA
UHGV-0351108_61	KOfam	K14059	int; integrase	NA
UHGV-0351108_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0351108_61	UniRef90	UniRef90_UPI000427FC57	site-specific integrase	NA
UHGV-0351108_61	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0351108_61	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0351108_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0351108_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0351108_61	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA