UHGV-0351425

Genome information

Genome length 33,761 bps

CDS count 42

Completeness 81.77% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0351425
vOTU ID	vOTU-024026
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR1910914_119_7032_round1256~3746052
BioSample	SAMN03398792
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.99
Jumbo phage	No

Genome content
Genome length	33,761 bps
GC content	37.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.97%
Average CDS length	759.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0351425_1	PHROG	phrog_15768	NA	unknown function
UHGV-0351425_1	eggNOG-mapper	158189.SpiBuddy_2340	NA	NA
UHGV-0351425_2	PHROG	phrog_9804	NA	unknown function
UHGV-0351425_2	UniRef90	UniRef90_A0A3A9I1A3	Inhibitor_G39P domain-containing protein	NA
UHGV-0351425_2	Structural annotation	PF11417	NA	NA
UHGV-0351425_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0351425_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0351425_5	UniRef90	UniRef90_UPI001D069DF3	single-stranded DNA-binding protein	NA
UHGV-0351425_5	eggNOG-mapper	879309.HMPREF9199_0149	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0351425_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0351425_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0351425_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0351425_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0351425_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0351425_6	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0351425_7	PHROG	phrog_1672	NA	unknown function
UHGV-0351425_7	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0351425_8	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0351425_10	PHROG	phrog_2776	NA	unknown function
UHGV-0351425_10	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0351425_10	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-0351425_10	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0351425_11	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0351425_11	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0351425_11	UniRef90	UniRef90_UPI00196047F8	site-specific DNA-methyltransferase	NA
UHGV-0351425_11	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0351425_11	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0351425_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0351425_11	COG	COG0863	DNA modification methylase	NA
UHGV-0351425_11	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0351425_12	PHROG	phrog_918	NA	unknown function
UHGV-0351425_12	UniRef90	UniRef90_UPI001CACBF45	NA	NA
UHGV-0351425_12	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-0351425_12	Pfam	PF19791	NA	DUF6275
UHGV-0351425_12	Structural annotation	PF19791	NA	NA
UHGV-0351425_13	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0351425_13	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0351425_13	eggNOG-mapper	1200557.JHWV01000001_gene280	NA	NA
UHGV-0351425_13	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0351425_14	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0351425_14	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0351425_14	UniRef90	UniRef90_UPI001D0616FF	dUTP diphosphatase	NA
UHGV-0351425_14	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0351425_14	Pfam	PF00692	dUTPase	dUTPase
UHGV-0351425_14	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0351425_14	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0351425_16	Structural annotation	PF14083	NA	NA
UHGV-0351425_18	PHROG	phrog_21026	NA	unknown function
UHGV-0351425_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0351425_20	UniRef90	UniRef90_D1YMC4	Phage transcriptional regulator, ArpU family	NA
UHGV-0351425_20	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0351425_20	Structural annotation	PF07374, TIGR02984	NA	NA
UHGV-0351425_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0351425_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0351425_23	UniRef90	UniRef90_UPI001D065029	terminase small subunit	NA
UHGV-0351425_23	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0351425_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0351425_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0351425_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0351425_24	PHROG	phrog_5902	NA	unknown function
UHGV-0351425_24	UniRef90	UniRef90_A0A1B1I1J7	Terminase	NA
UHGV-0351425_24	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0351425_24	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0351425_24	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0351425_26	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0351425_26	UniRef90	UniRef90_UPI001D07F371	portal protein	NA
UHGV-0351425_26	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0351425_26	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0351425_26	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0351425_27	PHROG	phrog_528	NA	unknown function
UHGV-0351425_27	UniRef90	UniRef90_A0A4S4AWB3	Endopeptidase	NA
UHGV-0351425_27	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0351425_28	PHROG	phrog_458	protease	other
UHGV-0351425_28	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0351425_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-0351425_29	UniRef90	UniRef90_A0A239Z8I8	Phage capsid family	NA
UHGV-0351425_29	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-0351425_29	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0351425_29	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0351425_30	PHROG	phrog_427	NA	unknown function
UHGV-0351425_30	Structural annotation	PF21190	NA	NA
UHGV-0351425_32	PHROG	phrog_394	tail protein	tail
UHGV-0351425_32	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0351425_32	Structural annotation	PF17212	NA	NA
UHGV-0351425_33	PHROG	phrog_376	tail protein	tail
UHGV-0351425_33	UniRef90	UniRef90_A0A3A4JUE0	E1_FCCH domain-containing protein	NA
UHGV-0351425_33	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0351425_34	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0351425_34	UniRef90	UniRef90_UPI001D08FF44	NA	NA
UHGV-0351425_34	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0351425_34	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-0351425_35	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0351425_35	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0351425_35	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-0351425_36	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0351425_36	UniRef90	UniRef90_A0A096AJQ8	NlpC/P60 domain-containing protein	NA
UHGV-0351425_36	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0351425_36	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0351425_36	Structural annotation	NF008096	NA	NA
UHGV-0351425_37	PHROG	phrog_9880	NA	unknown function
UHGV-0351425_37	UniRef90	UniRef90_D1YMD8	MuF_C domain-containing protein	NA
UHGV-0351425_37	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0351425_37	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0351425_38	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0351425_38	UniRef90	UniRef90_A0A2S7ZGN5	Pectate_lyase_3 domain-containing protein	NA
UHGV-0351425_38	eggNOG-mapper	1443111.JASG01000004_gene3704	Pectate lyase superfamily protein	NA
UHGV-0351425_38	COG	COG5434	Polygalacturonase	NA
UHGV-0351425_38	Structural annotation	PF05096, PF03906, MF_03008, TIGR03866, COG3204	NA	NA
UHGV-0351425_40	PHROG	phrog_23091	NA	unknown function
UHGV-0351425_40	Structural annotation	PF05105, NF035928	NA	NA
UHGV-0351425_42	PHROG	phrog_34863	NA	unknown function
UHGV-0351425_42	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0351425_42	eggNOG-mapper	546273.VEIDISOL_01083	LysM domain	NA
UHGV-0351425_42	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0351425_42	COG	COG1388	LysM repeat	NA
UHGV-0351425_42	Structural annotation	PF21277	NA	NA