UHGV-0351438

Genome information

Genome length 33,519 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9634

Prediction confidence Confident

Genome information
Genome ID	UHGV-0351438
vOTU ID	vOTU-000343
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5813235_141_130283_round347~4668508
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9634
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.76
Jumbo phage	No

Genome content
Genome length	33,519 bps
GC content	47.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.59%
Average CDS length	593.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0351438_1	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0351438_2	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0351438_4	PHROG	phrog_2824	virion structural protein	head and packaging
UHGV-0351438_4	UniRef90	UniRef90_A0A1Q6RL97	Mtd_N domain-containing protein	NA
UHGV-0351438_4	eggNOG-mapper	696281.Desru_3489	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0351438_4	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0351438_4	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0351438_4	Structural annotation	PF18454	NA	NA
UHGV-0351438_5	PHROG	phrog_31660	tail fiber protein	tail
UHGV-0351438_5	UniRef90	UniRef90_A0A1Q6RLA5	Mtd_N domain-containing protein	NA
UHGV-0351438_5	eggNOG-mapper	753085.F4YCS2_9CAUD	NA	NA
UHGV-0351438_5	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0351438_6	PHROG	phrog_5302	tail protein	tail
UHGV-0351438_6	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-0351438_6	eggNOG-mapper	665950.HMPREF1025_01337	Phage tail-collar fibre protein	NA
UHGV-0351438_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0351438_6	Structural annotation	COG1262	NA	NA
UHGV-0351438_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0351438_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0351438_7	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-0351438_7	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0351438_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0351438_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0351438_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0351438_8	PHROG	phrog_4105	NA	unknown function
UHGV-0351438_8	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0351438_9	PHROG	phrog_13712	holin	lysis
UHGV-0351438_9	eggNOG-mapper	796940.HMPREF9628_01284	NA	NA
UHGV-0351438_9	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0351438_11	UniRef90	UniRef90_UPI000D0ED4DE	HIRAN domain-containing protein	NA
UHGV-0351438_11	COG	COG0514	Superfamily II DNA helicase RecQ	NA
UHGV-0351438_11	Structural annotation	PF08797	NA	NA
UHGV-0351438_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0351438_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0351438_12	UniRef90	UniRef90_A0A1Q6RLA9	HTH cro/C1-type domain-containing protein	NA
UHGV-0351438_12	eggNOG-mapper	411473.RUMCAL_00402	endonuclease activity	NA
UHGV-0351438_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0351438_12	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-0351438_12	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0351438_16	Structural annotation	PF10723, NF040976	NA	NA
UHGV-0351438_17	KOfam	K07497	K07497; putative transposase	NA
UHGV-0351438_17	PHROG	phrog_8463	transposase	integration and excision
UHGV-0351438_17	UniRef90	UniRef90_A0A1Q6RLB1	Integrase catalytic domain-containing protein	NA
UHGV-0351438_17	eggNOG-mapper	938289.CAJN020000007_gene170	Integrase core domain	NA
UHGV-0351438_17	Pfam	PF13565	Homeodomain-like domain	HTH_32
UHGV-0351438_17	Pfam	PF00665	Integrase core domain	rve
UHGV-0351438_17	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0351438_17	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0351438_17	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-0351438_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0351438_22	UniRef90	UniRef90_A0A8E3SID3	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0351438_22	eggNOG-mapper	903814.ELI_3131	sulfate reduction	NA
UHGV-0351438_22	PADLOC	SspD_00001	SspD	SSP
UHGV-0351438_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0351438_22	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0351438_23	PHROG	phrog_5984	NA	unknown function
UHGV-0351438_23	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-0351438_23	Structural annotation	PF19561	NA	NA
UHGV-0351438_24	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0351438_24	UniRef90	UniRef90_A0A1Q6RL92	Adenine methyltransferase	NA
UHGV-0351438_24	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0351438_24	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0351438_24	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0351438_24	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0351438_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0351438_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0351438_25	UniRef90	UniRef90_A0A1Q6RLA2	Methyltransferase	NA
UHGV-0351438_25	eggNOG-mapper	1434319.W5RV19_9CAUD	helicase activity	NA
UHGV-0351438_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0351438_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0351438_25	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0351438_28	PHROG	phrog_24368	NA	unknown function
UHGV-0351438_28	eggNOG-mapper	1235798.C817_02588	NA	NA
UHGV-0351438_29	PHROG	phrog_24386	NA	unknown function
UHGV-0351438_29	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0351438_29	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0351438_30	UniRef90	UniRef90_A0A3D2D6W4	HTH cro/C1-type domain-containing protein	NA
UHGV-0351438_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0351438_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0351438_31	eggNOG-mapper	1145276.T479_20115	NA	NA
UHGV-0351438_31	Structural annotation	PF21578	NA	NA
UHGV-0351438_32	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0351438_32	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0351438_32	UniRef90	UniRef90_A0A1Q6RL79	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0351438_32	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0351438_32	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0351438_32	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0351438_32	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0351438_33	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0351438_33	UniRef90	UniRef90_A0A1Q6RL78	NA	NA
UHGV-0351438_33	eggNOG-mapper	411468.CLOSCI_01480	NA	NA
UHGV-0351438_33	Pfam	PF12961	NA	DUF3850
UHGV-0351438_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0351438_33	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0351438_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0351438_35	UniRef90	UniRef90_UPI001BEB79E1	helix-turn-helix domain-containing protein	NA
UHGV-0351438_35	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0351438_36	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0351438_36	UniRef90	UniRef90_A0A1Q6RLA1	HNH domain-containing protein	NA
UHGV-0351438_36	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-0351438_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0351438_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0351438_36	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0351438_37	eggNOG-mapper	1123288.SOV_2c03670	NA	NA
UHGV-0351438_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0351438_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0351438_38	UniRef90	UniRef90_A0A3D2D5D4	Terminase	NA
UHGV-0351438_38	eggNOG-mapper	927704.SELR_18220	Phage Terminase	NA
UHGV-0351438_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0351438_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0351438_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0351438_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0351438_39	Structural annotation	PF18059, NF041911	NA	NA
UHGV-0351438_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0351438_40	UniRef90	UniRef90_A0A1I1CIV4	Phage portal protein, HK97 family	NA
UHGV-0351438_40	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0351438_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0351438_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0351438_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0351438_41	KOfam	K06904	NA	NA
UHGV-0351438_41	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0351438_41	UniRef90	UniRef90_A0A3D2D6S6	HK97 family phage prohead protease	NA
UHGV-0351438_41	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0351438_41	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0351438_41	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0351438_41	COG	COG3740	Phage head maturation protease	NA
UHGV-0351438_41	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0351438_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0351438_42	UniRef90	UniRef90_A0A3D2D5M2	Phage major capsid protein	NA
UHGV-0351438_42	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-0351438_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0351438_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0351438_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0351438_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0351438_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0351438_45	Structural annotation	PF05657, NF040576, COG5003	NA	NA
UHGV-0351438_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0351438_46	Structural annotation	TIGR01725	NA	NA
UHGV-0351438_47	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0351438_50	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0351438_50	eggNOG-mapper	698769.JFBD01000002_gene2732	Phage tail tape measure protein	NA
UHGV-0351438_50	COG	COG3953	SLT domain protein	NA
UHGV-0351438_50	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0351438_51	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0351438_51	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA